Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq8798 95.1 1e-14 seq11704 91.5 1e-13 seq9269 82.4 6e-11 seq8726 82.4 6e-11 >seq8798 Length=192640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | |||||| | || ||||| ||||| || ||| || | | Sbjct 20641 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 20700 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| ||||| ||||| | || ||| || Sbjct 20701 GATACCATCGACAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAG 20760 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | ||||| || || ||||| | |||||| | || |||| ||||||||| Sbjct 20761 CAAAGATTAATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACAAT 20820 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || ||||| || || ||| |||| | |||||| |||| || Sbjct 20821 ATTCAGAAAGAATCAACCCTGCACTTGGTTCTTCGATTAAGAGGTGG 20867 >seq11704 Length=175292 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || |||||||||| ||||||| ||||| || |||||| | ||| Sbjct 63403 GACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTTGAA 63462 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | ||| | || ||||||||||| || || || ||||||||||| Sbjct 63463 GATGGTAGAACCTTAGCTGATTACAATATCCAGAAAGAGTCTACTCTTCA 63512 >seq9269 Length=281999 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||||||||||| || || ||||| || || ||| | ||| Sbjct 49633 GACAAAGAAGGTATACCACCTGATCAACAAAGGCTCATATTTGCTGGTAAGCAACTTGAA 49692 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | |||| | || |||||||| ||||| || || ||||||||||| Sbjct 49693 GATGGTAGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACTCTTCA 49742 >seq8726 Length=217380 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || ||| | ||||| || || || ||| ||||||| | ||| | || ||| Sbjct 142616 GATCAGCAGAGATTGATCTTCGCCGGAAAGCAACTGGAAGACGGAAGAACACTCGCGGAT 142557 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || ||||||||||| || |||||| ||||| | || ||| ||||||| Sbjct 142556 TACAACATCCAAAAGGAATCGACGCTTCACTTGGTGCTCCGTTTAAGAGGAGG 142504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410738147845010