Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9253 125 1e-23 seq8798 125 1e-23 seq9269 116 6e-21 seq10330 114 2e-20 seq11704 107 3e-18 seq8634 105 1e-17 seq9990 86.0 9e-12 seq8641 86.0 9e-12 seq11600 84.2 3e-11 >seq9253 Length=129212 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||| || || || ||||| ||||| | ||| || Sbjct 94630 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACACTAGAGGTAGAATCATC 94689 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| ||| || ||||| |||||||| || ||||| ||||| Sbjct 94690 AGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAAGAAGGAATCCCACCGGATCA 94749 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||||||||| || || || ||||| | | ||||| || Sbjct 94750 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGACGGTAGAACACTCGCCGATTACAA 94809 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || ||||||||||| | |||||||| | ||| || |||| ||| Sbjct 94810 CATCCAGAAAGAATCAACGCTTCATTTGGTACTCCGTCTAAGAGGAGGT 94858 >seq8798 Length=192640 Score = 125 bits (138), Expect = 1e-23 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || ||||| || ||||| || || ||| | ||| | || ||| Sbjct 20641 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTC- 20699 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| || ||| |||| || || ||||||||||| ||||| || || || || | Sbjct 20700 TGATACCATCGACAATGTTAAGGCA-AAGATTCAAGATAAGGAAGGCATTCCTCCAGACC 20758 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||| | || || || || ||||| | || ||| | || || || | ||||| | Sbjct 20759 AGCAAAGATTAATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACA 20818 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| ||||||||||| |||| |||||| | || ||| |||||||||| Sbjct 20819 ATATTCAGAAAGAATCAACCCTGCACTTGGTTCTTCGATTAAGAGGTGGTAT 20870 Score = 120 bits (132), Expect = 5e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| | |||||||| || ||||| ||||| |||| ||| Sbjct 21553 ATGCAAATATTTGTCAAGACTTTGACAGGCAAGACAATAACCTTAGAGGTTGAGAGC-TC 21611 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || ||||| || || ||||| || ||||| || || Sbjct 21612 GGACACTATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGACCA 21671 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || || || || ||||| |||||||| |||| ||||| | ||||| || Sbjct 21672 ACAGAGACTCATCTTCGCTGGGAAACAGCTAGAGGATGGTCGGACATTGGCTGATTACAA 21731 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || ||||| ||| | || |||||| | ||| | || ||||| Sbjct 21732 CATCCAGAAGGAATCGACTCTTCACTTGGTTCTTCGTCTTCGTGGTGG 21779 >seq9269 Length=281999 Score = 116 bits (128), Expect = 6e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || |||||||||||||||||||||||||||||||| || ||||| || || ||| | Sbjct 49630 CAGGACAAAGAAGGTATACCACCTGATCAACAAAGGCTCATATTTGCTGGTAAGCAACTT 49689 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT-TTGGT 124747 || ||| || |||| |||| ||||| || ||||| ||||| || ||| | ||| ||| Sbjct 49690 GAAGATGGTAGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACTCTTCATCTTGTC 49749 Query 124748 TTTACGTTTACGAGGTGGTATTA 124770 || | | ||| ||||||||| || Sbjct 49750 TTGAGGCTTA-GAGGTGGTACTA 49771 >seq10330 Length=49715 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || |||||||| || || || ||||| || || ||||| ||||| |||||| Sbjct 16058 AAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAGCAGAGACTTATCTTTGCTGGAAAA 15999 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || |||||||| | || || || | ||||||||||| || |||||||||||| | ||| Sbjct 15998 CAGTTAGAGGACGGCCGTACTTTGGCTGATTATAATATCCAGAAAGAATCAACTCTTCAT 15939 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | | | || |||||||| Sbjct 15938 TTGGTTCTCAGGCTTCGTGGTGGTAT 15913 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| | || || || || || || | ||| | || ||| Sbjct 15686 ATGCAAATATTTGTCAAGACCTTGACTGGTAAGACCATTACCCTTGAGGTGGAGAGC-TC 15628 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | ||| || || || ||||| |||||||| ||||| || || Sbjct 15627 TGACACCATTGACAACGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCACCAGACCA 15568 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || ||||| || | |||||| |||| ||||||| || ||||| Sbjct 15567 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTAGCTGACTATAA 15508 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || | || ||||| ||||| | || |||||||| Sbjct 15507 CATCCAGAAAGAGTCGACCCTTCACTTGGTGTTACGACTCCGTGGTGGTAT 15457 >seq11704 Length=175292 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||||||||||||||| ||||||||| | ||||| ||||| || |||||| | Sbjct 63400 CAGGACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTT 63459 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| || |||| |||| ||||| ||||| || ||||| || ||| | ||| | || Sbjct 63460 GAAGATGGTAGAACCTTAGCTGATTACAATATCCAGAAAGAGTCTACTCTTCATCTTGTA 63519 Query 124749 TTACGTTTACGAGGTGGTATTA 124770 || | | ||||||||| || Sbjct 63520 TTGAGACTTAGAGGTGGTACTA 63541 >seq8634 Length=210279 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| || || || ||||| ||||| ||||| || Sbjct 12243 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCATCC 12184 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | ||| ||| || ||||| || ||||| || ||||| ||||| Sbjct 12183 GACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAG 12124 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || |||||||||||||| || | | || | | ||||| || Sbjct 12123 CAGCGATTGATATTCGCCGGAAAACAATTAGAAGACGGAAGGACTCTCGCCGATTACAAC 12064 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || |||||||| | |||||||| ||||| | |||| ||| Sbjct 12063 ATCCAGAAGGAATCAACGCTTCATTTGGTGCTACGTCTGAGAGGAGGT 12016 >seq9990 Length=160576 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 |||||| |||||||| || ||||| ||||| || || || ||| | || || || ||||| Sbjct 159567 GAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAGCAGAGGTTGATCTTCGCCGGAAA 159508 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 ||| | || || | | || || | || || ||||||||||| || ||||| | || Sbjct 159507 GCAACTTGAAGACGGCAGGACTTTGGCTGACTACAATATTCAAAAGGAGTCAACCCTTCA 159448 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| | || || ||||| Sbjct 159447 CTTGGTCTTGCGTCTTCGTGGAGGTAT 159421 >seq8641 Length=178042 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 |||||| |||||||| || ||||| ||||| || || || ||| | || || || ||||| Sbjct 1010 GAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAGCAGAGGTTGATCTTCGCCGGAAA 1069 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 ||| | || || | | || || | || || ||||||||||| || ||||| | || Sbjct 1070 GCAACTTGAAGACGGCAGGACTTTGGCTGACTACAATATTCAAAAGGAGTCAACCCTTCA 1129 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| | || || ||||| Sbjct 1130 CTTGGTCTTGCGTCTTCGTGGAGGTAT 1156 >seq11600 Length=84080 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/232 (68%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||| || ||||| | ||||||||| ||||| | ||||||||||||||||| | Sbjct 22100 GCAATGTTAAACGGCACACCAAGACCCATATCGGCTGAGCGTTGATACATTTGACATGAA 22159 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || || | ||| |||| || ||| |||| ||| || || || | |||| Sbjct 22160 AG---TTCACCATTTGCAACATAGAACTGTGCAAACATATGGCATGGAGGAAGTGCCATC 22216 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattt 205662 | || ||| |||||||| || | | ||| || ||| | ||||| || || Sbjct 22217 AGCTTAAGATCAGGTGGATTCCAAGCCGACATTATAATCCTTCGATCATCAGGATTGTTC 22276 Query 205663 tttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAAT 205714 || || || || || | || || | ||||||||||| ||| ||||||| Sbjct 22277 TTAATCTTGTTAATTACATCTGAGAGCTGATCAAATCCATGACCAGTATAAT 22328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755345372912000