Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq10330 107 3e-18 seq9253 104 3e-17 seq11704 100 4e-16 seq8458 96.9 5e-15 seq8634 95.1 2e-14 seq9269 86.0 9e-12 seq8798 86.0 9e-12 >seq10330 Length=49715 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||||||| | ||| |||||||| ||||||||||| | Sbjct 15916 CCACCACGAAGCCTGAGAACCAAATGAAGAGTTGATTCTTTCTGGATATTATAATCAGCC 15975 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || || ||||| |||||||||||||| || | ||| |||||||| |||||| Sbjct 15976 AAAGTACGGCCGTCCTCTAACTGTTTTCCAGCAAAGATAAGTCTCTGCTGATCTGGAGGA 16035 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 16036 ATGCCTTCTTTGTCCTG 16052 >seq9253 Length=129212 Score = 104 bits (114), Expect = 3e-17 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | | ||||||||| | || |||||||| || || ||||| | Sbjct 94857 CCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCG 94798 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || ||||||||||| || || ||||||| || |||||||| || Sbjct 94797 AGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGG 94738 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| || ||||| |||||| Sbjct 94737 ATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTACC 94678 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 |||||||| ||||| || || |||| ||||| | ||| || |||||||| || Sbjct 94677 TCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTGTT 94625 >seq11704 Length=175292 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || |||||||||||||| ||||| | ||| | |||||| ||||| ||||| ||||| Sbjct 63539 GTACCACCTCTAAGTCTCAATACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAATCA 63480 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||||| | ||| || | |||||| |||||||| || | || ||| ||||| || Sbjct 63479 GCTAAGGTTCTACCATCTTCAAGTTGTTTACCAGCAAATATAAGTCGTTGTTGATCTGGT 63420 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 63419 GGTATACCTTCTTTGTCCTG 63400 >seq8458 Length=139779 Score = 96.9 bits (106), Expect = 5e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| ||||| ||| || ||| | ||||| ||||||| || ||| || | | | Sbjct 91563 TTCCTGAAGGAACTTACGCTAGAATCGCTCCGAGATCTGGCTTGGCTTGGAAATACTCAA 91504 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| |||| || || || ||||| | ||||| |||||| || || || ||||| | Sbjct 91503 TCGATGTTGGTGCAGGCGTGATTGATGCTGATTACAGAGGACCAGTTGGTGTGATATTGT 91444 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAAT 10606 ||||||||||| ||| |||||| | | || ||||||| ||||| |||| || || Sbjct 91443 TTAATCATTCTGATGTTGATTTTGAAGTGAAGTTAGGAGATCGAATAGCTCAGTTGAT 91386 >seq8634 Length=210279 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | || |||||||| | || ||||| || || || ||||| | Sbjct 12017 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCG 12076 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | || |||||||||||||| || || ||||||| ||||||||||| || Sbjct 12077 AGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGG 12136 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 12137 ATTCCTTCCTTGTCTTG 12153 >seq9269 Length=281999 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||||||||| || || || | ||| | |||||| ||||| || || ||||| Sbjct 49769 GTACCACCTCTAAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGAATGTTGTAATCA 49710 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | |||||| | ||| || | ||| || |||||||| || | ||||| ||||| || Sbjct 49709 GCTAAAGTTCTACCATCTTCAAGTTGCTTACCAGCAAATATGAGCCTTTGTTGATCAGGT 49650 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 49649 GGTATACCTTCTTTGTCCTG 49630 >seq8798 Length=192640 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || | || |||||||| ||||| ||||| | Sbjct 20867 CCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCAGCC 20808 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | ||||| ||||| || || ||||||||||| || |||||| Sbjct 20807 AAGGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGAGGA 20748 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 20747 ATGCCTTCCTTATCTTG 20731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743417519852800