Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq9990 87.8 1e-12 seq8641 87.8 1e-12 seq8848 86.0 4e-12 seq8379 86.0 4e-12 seq11021 82.4 5e-11 >seq9990 Length=160576 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||||||||||||||| | || || | || || | |||||| || ||||| Sbjct 158548 TCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAG 158607 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | | ||| ||||| ||||| ||| | || | Sbjct 158608 ATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATTG 158667 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || || |||| |||||||| || ||||| || || |||||| Sbjct 158668 TCAATCGTGTCAGAGCTCTCCACCTCCAGTGTGATGGTCTTCCCGGTCAGTGTCTTCACA 158727 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 158728 AAAATCTGCAT 158738 >seq8641 Length=178042 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||||||||||||||| | || || | || || | |||||| || ||||| Sbjct 2029 TCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAG 1970 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | | ||| ||||| ||||| ||| | || | Sbjct 1969 ATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATTG 1910 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || || |||| |||||||| || ||||| || || |||||| Sbjct 1909 TCAATCGTGTCAGAGCTCTCCACCTCCAGTGTGATGGTCTTCCCGGTCAGTGTCTTCACA 1850 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 1849 AAAATCTGCAT 1839 >seq8848 Length=112532 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || |||| ||| ||| ||||| ||||||||||| | || |||| | || Sbjct 94588 AGGACGAGATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCT 94529 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || | ||||||||||| || | | |||||||| Sbjct 94528 TCGAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCT 94469 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | || | || || || || | |||||||| Sbjct 94468 TGGATC-TTCGCTTTGACATTGTCGATGGTGTCAGATGACTCAACCTCAAGGGTGATGGT 94410 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 94409 CTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 94376 >seq8379 Length=157374 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || |||| ||| ||| ||||| ||||||||||| | || |||| | || Sbjct 116294 AGGACGAGATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCT 116235 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || | ||||||||||| || | | |||||||| Sbjct 116234 TCGAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCT 116175 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | || | || || || || | |||||||| Sbjct 116174 TGGATC-TTCGCTTTGACATTGTCGATGGTGTCAGATGACTCAACCTCAAGGGTGATGGT 116116 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 116115 CTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 116082 >seq11021 Length=502384 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| | ||| |||| |||| |||| || || || ||||| Sbjct 217115 TTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCGTCTTCCAGTTGTTTCCCGGCGAA 217056 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | ||||||||||| || | | |||||||| ||| || ||||| | || Sbjct 217055 TATCAATCGCTGCTGGTCCGGTGGTATTCCTTCCTTGTCTTGAATC-TTCGCTTTGACAT 216997 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | || | || || || || | || || || || || || || ||||||| Sbjct 216996 TGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATAGTCTTTCCCGTTAGGGTTTTCA 216937 Query 34377 CAAAGATCTGCATCGCT 34393 | |||||||||||| || Sbjct 216936 CGAAGATCTGCATCTCT 216920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323025872890400