Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq11595 181 1e-40 seq9146 167 2e-36 >seq11595 Length=173172 Score = 181 bits (200), Expect = 1e-40 Identities = 558/853 (65%), Gaps = 15/853 (2%) Strand=Plus/Plus Query 15965 TTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTT 16024 || |||||||| || ||||| || | | ||| ||| |||||| ||||||| ||||| Sbjct 64598 TTCTCAAAGAAGTTAGTTTTACCCTGAAGTGATATAAGTTCCATCCAATCAAACGGATTA 64657 Query 16025 TTTGAACAATAGTATTTATCGCATCCCAATTCCAAC-AATAATCTATCCGCCACAAATTC 16083 | || || ||| || | ||||| || | || | |||||| || ||||| || Sbjct 64658 GTCACACCGTACACCTTACCGTA-CCCAAGCGCACCTAACAGTCTATCAGCAACAAACTC 64716 Query 16084 TATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGT 16143 |||||||| ||||||| |||| ||||||||| | ||| || | || || Sbjct 64717 GATATACTGACTCATTAACTCACGGTTCATTCCAACTAACGCGCATGGAAGCGCGTCGCA 64776 Query 16144 TAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT--- 16200 || ||| | | |||| || | || || || || || | |||| || || | Sbjct 64777 TACAAACTCTCTTTCAATCTCTACTGCGTCGCAGACGATTGATTTTAC-ACGCTCCTCCG 64835 Query 16201 -TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTT 16259 || | | |||| | | | |||| | | ||||| ||||| || || || |||| Sbjct 64836 TTAGCTTTGTTCTTAAGA-GCGAGTAAAGA--AGGCAAGCGAAATCGCAGTGTAAGCCTT 64892 Query 16260 CGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAA 16319 |||| | | |||||||||||||| || || | || ||||| ||||||||||| || | Sbjct 64893 CGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTCTTTA 64952 Query 16320 TCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAA 16379 ||| || |||| | ||| ||| || ||||| ||||||||||| || || || | Sbjct 64953 GCCAGAAGATAGAGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAAGCTA 65012 Query 16380 CCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctt 16439 | | ||| ||| || | ||| | | | || ||||| | | ||||| | |||| Sbjct 65013 CGATTCGTTCAGCGAAGGTTTGAGAT---CCATCGATCCACGTCATCGCCCACTGAGCTT 65069 Query 16440 tttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTAT 16499 | | ||| || || | || || ||| ||| | || || | | |||||| ||| Sbjct 65070 TCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTCTTTGTTAT 65129 Query 16500 CTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTA 16559 || ||||||||||| | || | ||||||||| || |||||||||||||| || || | Sbjct 65130 CTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTCAATCGCGA 65189 Query 16560 TCTGAAAACCAT-AAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCT 16618 | || || || | ||||||| | || || || | |||||| || || || | Sbjct 65190 TTTGGAATCCGTAAAAAGCA-CGCGCCTCCGAGACTTGTACATCTGACATGAATCGAGAA 65248 Query 16619 GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATA 16678 || | || || ||| |||||||| ||| || || || || || | |||||| ||| Sbjct 65249 GCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGAAGAAAGCGAGGACGTGTTTGATA 65308 Query 16679 AAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACC 16738 || | |||| || || || ||| || |||| ||||| ||| || Sbjct 65309 AAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGTCCGTCTTGTGATAGATCTACT 65368 Query 16739 TCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAA 16798 ||||| ||||||| || || || | || || |||||||| | ||| || | | ||| Sbjct 65369 TCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTATACATCTCCCAGATCTGTGGGTAG 65428 Query 16799 ACAATAGGAAACA 16811 ||| || |||| Sbjct 65429 TGAATTGGGAACA 65441 >seq9146 Length=70564 Score = 167 bits (184), Expect = 2e-36 Identities = 573/887 (65%), Gaps = 11/887 (1%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || |||||| || || | ||| | ||||| || || || ||||| ||| Sbjct 53931 GACATAACAGAAGCTTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCT 53990 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | || ||| ||| |||||| ||||||| |||||| | || || ||| || | Sbjct 53991 TGTAGTGATATAAGTTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTAC 54050 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 || | | || |||||||||||| ||||| || |||||||| |||||| |||| | Sbjct 54051 CCTAGCGAAACCATTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGG 54110 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | || || | || || || ||| | | |||| || | |||| Sbjct 54111 TTCATTCCAACCAACGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACC 54170 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATT---TAACGGAGGGTTTAATAAGTGTTTA 16225 || || || || | ||| | || || ||| | | | | || | || Sbjct 54171 GCGTCGCAGACGAT-TGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGAGAGTA 54229 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | | | ||||| |||||||| || || |||||||| | | |||| || ||||| Sbjct 54230 GAGA--AGGCAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAG 54287 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||| ||||| || |||||||| || | ||| || || | ||| ||| Sbjct 54288 AAAGTTAAACCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCG 54347 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || ||||| ||||||||||| || || || || | ||| ||| | | ||| | | Sbjct 54348 GAGAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGAT 54407 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | || ||||| | | ||||| | |||||| | |||| || || | || Sbjct 54408 ---CCATCGATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCA 54464 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 ||||| ||| | || || | | ||||| ||||| ||||| ||||| | || | | Sbjct 54465 ATTGCGCGAAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGA 54524 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGC 16584 |||||||| || |||||||||||||| || || || ||||| || | ||||||| | || Sbjct 54525 CTATACATCTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCA-CGCGC 54583 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 || || | ||| || || || || | || | || || ||| |||||||| Sbjct 54584 CTCCGAGACTTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATC 54643 Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTT 16704 || || ||||| || || | |||||| || || | ||| || || || Sbjct 54644 TGATGCAGCGAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATT 54703 Query 16705 TAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAAC 16764 ||| ||| || | ||||| ||| || ||||| | ||||| || || || | Sbjct 54704 CTCCCAATCACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTC 54763 Query 16765 AGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || || || ||||| | ||| || | | ||| ||| ||||||| Sbjct 54764 GGCTTTCTTGTACATCTCCCAGATCTGTGGATAATGAATCGGAAACA 54810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462444270899000