Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq9146 161 1e-34 seq11595 152 5e-32 >seq9146 Length=70564 Score = 161 bits (178), Expect = 1e-34 Identities = 579/891 (65%), Gaps = 27/891 (3%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 |||||| || || | ||| | |||||| || |||||||||||||||| ||||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 |||||| ||||||| |||||||| ||| |||| ||| | | ||||| | | Sbjct 54005 TTCCATCCAATCAAACGGATTTGTC-ACACCGTACACCTTACCGTACCCTAGCGAAACCA 54063 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 |||||||||||||| ||||||||||| ||| ||||| |||| ||||| || | | Sbjct 54064 TTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCA 54123 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 |||| | | || ||| ||| |||| || || || ||| | | Sbjct 54124 ACGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGA 54183 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT-----AGATGTTTAAAAATTAAACA 14205 | | | | || | | | || | || ||| | || | | | || Sbjct 54184 TTGACTTCACGCGCTCTTCCGTA--AGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCA 54238 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 || |||||||| || | ||| || |||| | || ||||| ||||| || ||||| || Sbjct 54239 AGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACC 54298 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324 ||||| | |||||||| |||| ||| || |||| | | || | | ||||| ||||| | Sbjct 54299 AGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGA 54357 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT- 14383 | || ||||| ||| || |||| | |||||| |||| | ||| | || || Sbjct 54358 TACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAG-----TTTGAGATCCATC 54412 Query 14384 -ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| | | ||||||| | ||| || ||| || || |||||||| || Sbjct 54413 GATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCG 54472 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 ||| | ||| || |||||||| || | || |||||||| | ||| | |||||||| Sbjct 54473 AAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACAT 54532 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 ||||| || || || || || || || ||||| || |||||| | || || || Sbjct 54533 CTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGAC 54592 Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 ||| || ||||| |||| || | ||| || ||| || ||||| || || Sbjct 54593 TTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGC 54652 Query 14623 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATC 14682 ||||| || | | || ||| || |||| | || | | | | || || | |||||| Sbjct 54653 GAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATC 54712 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 | || | || ||||||||||| || | ||||| || || | ||||| || Sbjct 54713 ACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTT 54772 Query 14743 ATACATTACCCATATTTCTTTATATAAT--ATAGGAAAAACTACA-AATCT 14790 ||||| |||| | ||| | ||||| || ||||| | |||| ||||| Sbjct 54773 GTACATCTCCCAGA--TCTGTGGATAATGAATCGGAAACA-TACAGAATCT 54820 >seq11595 Length=173172 Score = 152 bits (168), Expect = 5e-32 Identities = 540/834 (65%), Gaps = 15/834 (2%) Strand=Plus/Plus Query 13930 TCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGG 13989 || ||| |||||||||||||||||||| | ||||||||| |||||| ||||||| || Sbjct 64594 TCNTTTCTCAAAGAAGTTAGTTTTACCCTGAAGTGATATAAGTTCCATCCAATCAAACGG 64653 Query 13990 ATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGA 14048 ||| || ||| |||| ||| | | || || | || | |||||| |||| | Sbjct 64654 ATTAGTC-ACACCGTACACCTTACCGTACCCAAGCGCACCTAACAGTCTATCAGCAACAA 64712 Query 14049 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 14108 |||| ||||| ||| |||||| |||| ||||| || | || |||| | Sbjct 64713 ACTCGATATACTGACTCATTAACTCACGGTTCATTCCAACTAACGCGCATGGAAGCGCGT 64772 Query 14109 TGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCAT 14168 | || ||| ||| |||| || || || ||| | || | | | || | Sbjct 64773 CGCATACAAACTCTCTTTCAATCTCTACTGCGTCGCAGACGATTGATTTTACACGCTCCT 64832 Query 14169 TAGA-AGGAGGATATTTTAGAT-GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCC 14226 | || | || ||| | |||| | | || || ||||| || || | ||| Sbjct 64833 CCGTTAGCTTTGTTCTTAAGAGCGAGTAAAGA--AGGCAAGCGAAATCGCAGTGTAAGCC 64890 Query 14227 CTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttt 14286 || |||| | || | |||||||| || |||||||| ||||| | ||||||||| || Sbjct 64891 TTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTCTT 64950 Query 14287 tAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 || ||| || || | ||| || | | ||||| ||||| || || ||||| ||| || | Sbjct 64951 TAGCCAGAAGATAG-AGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAAG 65009 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCCATTTTCTAGCCCATTC 14403 ||| | |||||| | || | ||| | || || ||||| | | ||||| | Sbjct 65010 CTACGATTCGTTCAGCGAAGG-----TTTGAGATCCATCGATCCACGTCATCGCCCACTG 65064 Query 14404 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTT 14463 || ||| || || || || |||||||||||| ||| | ||| || ||||||| Sbjct 65065 AGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTCTTT 65124 Query 14464 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14523 || | || || ||||| | ||| | |||||||| ||||| || || || || || Sbjct 65125 GTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTCAAT 65184 Query 14524 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCT 14583 || || || || || |||||| | || || || |||||| ||||| |||| Sbjct 65185 CGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGTACATCTGACATGAATCG 65244 Query 14584 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14643 || | ||| || ||| || ||||| ||| || || || || | | || ||| Sbjct 65245 AGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGAAGAAAGCGAGGACGTGTTT 65304 Query 14644 AATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATC 14703 ||||||| | || | | | | || || | ||||||| | || | || ||||| Sbjct 65305 GATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGTCCGTCTTGTGATAGATC 65364 Query 14704 TACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATAT 14757 |||||| ||| | ||||| || || | ||||| |||||||| |||| || Sbjct 65365 TACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTATACATCTCCCAGAT 65418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482274966516200