Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq9253 98.7 8e-16 seq8798 95.1 9e-15 seq10330 82.4 6e-11 >seq9253 Length=129212 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||| | ||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct 94857 CCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCG 94798 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 | |||| ||| |||||||||||||| || || |||| | || ||||||||| Sbjct 94797 AGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCC 94744 >seq8798 Length=192640 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || || ||| |||| ||| || ||||||||||| ||||| ||||| || ||| Sbjct 20867 CCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCAGCC 20808 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||||| || || |||| | |||||| || || || Sbjct 20807 AAGGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGAGGA 20748 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| ||| | | ||| || | | | || ||| | |||| Sbjct 20747 ATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCGACC 20688 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| || | |||||| || ||||||||||| Sbjct 20687 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 20641 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| || || || || ||||| || ||||||||||| || Sbjct 21095 CCACCACGAAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCG 21036 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||| | || || || || ||||||| || || ||||| || Sbjct 21035 AGTGTTCTTCCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGATCGGGAGGG 20976 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || |||| |||||| | ||| ||||||| | ||| | Sbjct 20975 ATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAACT 20916 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||||||||| | || || ||||| || ||||| Sbjct 20915 TCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 20869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || || || || || ||||||||||||||||| || | |||| | | ||| Sbjct 21537 AAGTACTAAATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGTGTTCTCCCATC 21478 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | || || || ||| ||||||| || || || ||| || | |||||||| || Sbjct 21477 CTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTC 21418 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| ||||||| | ||| ||| | ||||| | Sbjct 21417 CTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCCAAAGTGATTGT 21358 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||| | || || |||||||| ||||| Sbjct 21357 TTTGCCGGTAAGGGTCTTGACAAAAATCTGCAT 21325 >seq10330 Length=49715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| ||||| || ||||||||||||||||| || | ||| || ||| Sbjct 15247 AGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGCAAGTGTGCGACCATCC 15306 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || || |||| || | || || ||| || | |||||||| || Sbjct 15307 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCT 15366 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT---TTCAATGGTGATG 18290 || | |||||| | ||| |||||| | |||| | | |||| |||||| Sbjct 15367 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCA--GAGCTCTCTACCTCCAAT-GTGATG 15423 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||||||||| ||| || ||||| || ||||| Sbjct 15424 GTCTTGCCGGTCAGTGTCTTCACAAAGATCTGCAT 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379289838567675