Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11595 192 7e-44 seq9146 190 3e-43 seq8766 122 1e-22 seq11555 104 3e-17 seq11110 87.8 2e-12 >seq11595 Length=173172 Score = 192 bits (212), Expect = 7e-44 Identities = 403/590 (68%), Gaps = 8/590 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||| | || ||||||| | ||||| ||||| || || || | | Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAA 33700 || ||||| || || || || || ||||| || || || || || | | ||||| ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTA 33759 ||| ||||| || ||| || || | | || || | | | | | ||| | Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATC-CATCGA 65045 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 ||||| | ||||| | || ||||| || ||||| || ||||| || ||| || Sbjct 65046 TCCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAA 65105 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33879 |||||| | | | || || ||||||| | ||||||||||| | ||||||||||| | Sbjct 65106 AGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCT 65165 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 | |||||||| || ||||| || || || |||||||| ||| | ||||| | | | Sbjct 65166 CAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTT 65225 Query 33940 GCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 | || |||| ||| ||||| || | ||| || || |||||||| || || Sbjct 65226 GTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCG 65284 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATC 34057 || || || | || ||||| ||||| | |||| | | || |||| || | |||||| Sbjct 65285 AAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGT-TTAGATTCTCCCAATC 65343 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 |||| |||| ||| |||||||| | ||||| || ||||| || || || || Sbjct 65344 GCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTT 65403 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 |||||| | |||||| | | || || |||||||| ||| ||||||| Sbjct 65404 ATACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTAT 65453 >seq9146 Length=70564 Score = 190 bits (210), Expect = 3e-43 Identities = 579/882 (66%), Gaps = 12/882 (1%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||||||||| || || ||||||||||||||||| |||||||| |||| | ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 |||||| ||||||||||||| || ||| ||| | || | || | | || Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCAT 54064 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 |||||||| || || || || ||||| |||| | |||| |||||||| | | Sbjct 54065 TAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAA 54124 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 |||||| || | | ||| ||| ||| || ||||| | | || Sbjct 54125 CGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGAT 54184 Query 33530 AAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 | | ||| ||||| | | | | | | | | | || | | | || ||| Sbjct 54185 TGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGAGAGTAGAGA--AGGCAAGCG 54242 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 ||||| ||||| | || ||||||| | |||| ||| || || || || | || ||| Sbjct 54243 AAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGGC 54302 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAAGATTCC 33706 || || || || || || ||||| || || ||| | || | | ||||| |||||||| || Sbjct 54303 ATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGATACC 54361 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTATCCACT 33765 ||| || ||| || || | | || || || || | | | ||| ||||| Sbjct 54362 TTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC-CATCGATCCAAG 54420 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | ||||| | || ||||| | || ||||| || ||||| || || |||||||| Sbjct 54421 TCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAGAT 54480 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | | | || ||| ||||||| | ||| ||||||| | ||||||||||| || |||| Sbjct 54481 GATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGAAT 54540 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 |||| || ||||| || || ||||||||||| ||| | ||||| | | || || | Sbjct 54541 GAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAACAT 54600 Query 33946 CTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| ||| ||||| || | ||| || || |||||||| || || ||||| Sbjct 54601 CTG-ACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAAAAA 54659 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGAT 34063 || | || ||||| || || | ||| | | || |||| || | ||||||| Sbjct 54660 GCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGT-TTAGATTCTCCCAATCACGTCC 54718 Query 34064 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 || | |||| ||| |||||||| | ||||| |||||||| || || || || ||||| Sbjct 54719 GTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTACAT 54778 Query 34124 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 | |||||| | |||| || || || || ||| ||||| Sbjct 54779 CTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq8766 Length=69736 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| ||||| || | |||||||| || || || |||||| | | ||| | | || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | || || || |||||||| | ||| ||||| || || || || | ||| | Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||| |||||||||||||||| | | | |||||||| | ||| ||| |||| | Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAACTGTCCCTTGGATTTTCAAAAGGTATGATCTTTCAA 54753 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||||||| |||||| | | ||| ||| || || || || ||||| Sbjct 54754 GAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | |||| ||| || | ||| | || | ||||||||| | |||||| Sbjct 54242 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGGACAATACC 54301 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | |||| | || ||||||||| || ||| Sbjct 54302 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCTCGAATATTATGAACTGA 54361 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || || || || ||| || | || ||| || | || ||||| || Sbjct 54362 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACATTCCTTAAGTGTTTCATAAAT 54421 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 ||| || ||||||||||| ||||| Sbjct 54422 GCCCTCAATGCTATCATCTTTCATG 54446 >seq11555 Length=225698 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| | ||| || | ||||||| || || || |||||| | | ||| | || || Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || | || || || || ||||| | ||| || || || | || | ||||||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||| |||||||||||||||| |||| | | ||| || | ||| ||| |||| | Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||||||||| || | ||| ||| || || || || || || Sbjct 13782 GTTTTAAAACCAAAGTAATCATATTCAAAATCACGATCATAGATTAT 13828 >seq11110 Length=291012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | |||| ||| || | ||| | || | ||||||||||| |||||| Sbjct 226146 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACC 226205 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | |||| ||||| |||||| || || Sbjct 226206 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGA 226265 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || || || || ||| || | || || ||| | || || || || Sbjct 226266 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAAT 226325 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||| || ||||||||||| ||||| | ||||||||||||| Sbjct 226326 GCCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629725371085200