Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9146 199 4e-46 seq11595 190 2e-43 seq11110 104 2e-17 seq8766 100 3e-16 seq11555 84.2 2e-11 >seq9146 Length=70564 Score = 199 bits (220), Expect = 4e-46 Identities = 581/884 (66%), Gaps = 18/884 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 ||||| || || | ||| ||| ||||||||| ||||| ||||||| |||||||||| Sbjct 53946 TTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAGT 54005 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||| ||||| ||| | | || || | | |||| | | | Sbjct 54006 TCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCATT 54065 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || || || ||||||||| ||||| || ||||| || | | Sbjct 54066 AATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAAC 54125 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | |||| || | | |||||| |||| || | |||||| || || || Sbjct 54126 GCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGATT 54185 Query 11579 GACGTTATAA---CTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCA 11635 ||| | | ||||| || | | | | | | | | || | | | || || Sbjct 54186 GACTTCACGCGCTCTTCCGTA-AGCTTCGTTCTCAACAGAGAGTAGAGA--AGGCAAGCG 54242 Query 11636 AAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGC 11695 |||||||| ||||| |||||||||| | ||||||||||| || || ||||| || ||| Sbjct 54243 AAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGGC 54302 Query 11696 ATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCC 11755 || | |||||||| |||| ||| || || | | ||| ||| || ||||| || || Sbjct 54303 ATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATACCT 54362 Query 11756 TCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT--ATCCATT 11813 || ||| || || ||||| | || ||| || | | ||| | | || ||||| Sbjct 54363 TCAACACAAGCGAAAGCTACGATTCGTTCAGCA-AAAGTTTG-AGATCCATCGATCCAAG 54420 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 | | ||||| | |||||||| | ||||| || ||||| || ||| ||| | || Sbjct 54421 TCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAGAT 54480 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | | ||| |||||||| | | ||||||||| | | | ||||||||| || |||| Sbjct 54481 GATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGAAT 54540 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT 11993 ||||||| || || || ||||||||||| || ||| || ||||| || || |||| Sbjct 54541 GAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAACAT 54600 Query 11994 C-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA---AAA 12049 | |||| |||| || | |||||| || || ||||| |||||| ||| Sbjct 54601 CTGACAT-GAATCGAGAAGCAAGATTCTCTAAAACGATTCCATC---TGATGCAGCGAAA 54656 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 || || || | ||||| || |||| ||| | | ||| || ||||||||| | Sbjct 54657 AAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCACGT 54716 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 || | ||||| |||||||||||| ||||||| || ||| | | || || ||| Sbjct 54717 CCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTAC 54776 Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || | |||||| | |||| | ||| || || ||| ||| || Sbjct 54777 ATCTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq11595 Length=173172 Score = 190 bits (210), Expect = 2e-43 Identities = 401/589 (68%), Gaps = 8/589 (1%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || || ||||| || ||||| |||||||||| | |||| || || || || |||||| Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGA-ACCAGAAAAGAA 11748 || ||||| | ||||||||| |||| ||| || |||| |||||| | ||| || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAG-AGCAAAAGCTACCGGAGAAGAA 64986 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-- 11806 || || || ||| || || ||||| | || ||| | | ||| | | || Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGT-TTGA-GATCCATCG 65044 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| | | ||||| | ||||||||| ||||| || ||||| ||||| | Sbjct 65045 ATCCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGA 65104 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || | ||| | | ||| | |||||| | | ||| ||||| | | | ||||||||| Sbjct 65105 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 65164 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||||||||| || || || ||||| ||||| || ||| || ||||| || Sbjct 65165 TCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACT 65224 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 |||||||| |||| |||| || | |||||| || || ||||| || || Sbjct 65225 TGTACATCTGACAT-GAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGC 65283 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 || || || || | ||||| ||||||| |||| | | ||| || |||||||| Sbjct 65284 GAAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATC 65343 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | |||| ||||| ||||||||||||| | ||||| || ||| | | || || Sbjct 65344 GCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTT 65403 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 |||||| | |||||| | | || | ||| ||||| ||| ||| ||| Sbjct 65404 ATACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTA 65452 >seq11110 Length=291012 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| |||||||| | |||||||||||||| |||||||| | | Sbjct 226465 TTGAGGCCTTGGAGTTCCAGCGTTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 226524 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| ||| |||| ||| || || |||||| | |||||| || | || Sbjct 226525 AGACATCAAATGATAAGTTTTGATTGCAGATTCAATATCATCCTTGTGAATGCCAACAGC 226584 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| ||||| ||||| || ||||| Sbjct 226585 AACCCTCATAAGCATGTGTTGAGGCCTTTC 226614 >seq8766 Length=69736 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 |||||| ||||||||| || || || | |||||||||||||| |||||||| | | Sbjct 54563 TTGAGGACTTGGAGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 54622 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| ||| || ||||||||| | ||||||||| | || Sbjct 54623 AGACATCAAATGGTAAGTTTTGATTGCAGATTCTATATCATCCTTGTGAATACCAACAGC 54682 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| ||||| ||||| |||||||| Sbjct 54683 AACCCTCATCAGCATGTGTTGAGGTCTTTC 54712 >seq11555 Length=225698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 38163 TCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGG 38222 |||||| ||||||| || | || ||| | ||| || | |||||||| | | ||| || Sbjct 13264 TCTTTTGCCACCTCCTTGGTCAACATAACGAACAGTATCATTATATACACGCAGCATTGG 13323 Query 38223 TACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT 38282 || |||||||||||| || ||| | || || ||| | || || ||||| || Sbjct 13324 AACAATACCATTAGATGATCCATTTGTGCCACGAATGTAACTTCCAGCTGCACGTATGTT 13383 Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTG-ATATTAAAGCGCATTGTTTTAACG 38341 || || | || || || || || || | || ||||| || || | |||||| | Sbjct 13384 GTGTACTGAAACACCAATACCTCCAGC-TGATCTGCTTATTACTGCACAATCTTTTAATG 13442 Query 38342 TATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 ||||| ||||||| || || || |||||||| || ||| | ||| |||||| Sbjct 13443 TATCATATATACCCTCGATGCTATCATCCTTCATACATAGCAGAAAGCAACTA 13495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468456190399600