Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9146 187 3e-42 seq11595 179 5e-40 seq8766 116 5e-21 seq11110 109 7e-19 seq11555 95.1 2e-14 >seq9146 Length=70564 Score = 187 bits (206), Expect = 3e-42 Identities = 578/882 (66%), Gaps = 12/882 (1%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||||||||| || || ||||||||||||||||| ||||||||||||| || ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 |||||| |||| || ||||| | ||| || | || | || | | || Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCAT 54064 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 |||||||| || ||||| || ||||| |||| | |||| |||||||| | | Sbjct 54065 TAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAA 54124 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 |||||| || | | ||| ||| ||| || |||||||| | || Sbjct 54125 CGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGAT 54184 Query 36106 AGATATTACTGTTTCTTCACTCGG--TGGATA-CAATAAATGTTTAAACATCAAACATGC 36162 || | || ||||| | | | | | ||| | | | || | | | || || Sbjct 54185 TGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCAAGC 54241 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 |||||| ||||||| || ||||||| | |||| ||| || || || || | || || Sbjct 54242 GAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGG 54301 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 36281 ||| || || || || || ||||| || || || |||| | | || || ||||| || | Sbjct 54302 CATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGATAC 54360 Query 36282 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACT 36341 |||| || || || || | | || || || || | ||| ||||| Sbjct 54361 CTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCCATCGATCCAAG 54420 Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 36401 | ||||| | || ||||| | || ||||| || || || || || |||||||| Sbjct 54421 TCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAGAT 54480 Query 36402 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 36461 | | | || ||| ||||||| | ||||||||| | | ||||||||||| || |||| Sbjct 54481 GATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGAAT 54540 Query 36462 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 36521 |||| || ||||| || |||||||||||||| ||| | ||||| | | || || | Sbjct 54541 GAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAACAT 54600 Query 36522 CTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| ||| ||||| || | ||| || || ||||| || || || ||||| Sbjct 54601 CTG-ACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAAAAA 54659 Query 36581 GCCAATACATGTTTTATAAAAT-ATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639 || | || ||||| || || | | || | || |||| || | ||||||| Sbjct 54660 GCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGT-TTAGATTCTCCCAATCACGTCC 54718 Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 || | |||| ||| |||||||| | ||||| |||||||| || || || || ||||| Sbjct 54719 GTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTACAT 54778 Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 | |||||| | |||| ||||| ||||| ||| ||||| Sbjct 54779 CTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq11595 Length=173172 Score = 179 bits (198), Expect = 5e-40 Identities = 398/589 (68%), Gaps = 6/589 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||||| || ||||||| | ||||| ||||| || || || | | Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| || || || || || ||||| || || || ||||| | | || || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || ||||| || || || || | | || || | | | ||| || Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATCCATCGAT 65046 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||| | ||||| | || ||||| || ||||| || || || |||||| ||| Sbjct 65047 CCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAA 65106 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 ||||| | | | || || ||||||| | ||| ||||| | | ||||||||||| || Sbjct 65107 GAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTC 65166 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 |||||||| || ||||| || ||||| |||||||| ||| | ||||| | | || Sbjct 65167 AGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTG 65226 Query 36517 TACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 36575 ||| |||| ||| ||||| || | ||| || || ||||| || || || | Sbjct 65227 TACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGA 65285 Query 36576 AAAACGCCAATACATGTTTTATAAAATATTTTTCG-TTTGGTGTTAGTTTATTCCAATCA 36634 | || || | || ||||| ||||| | |||| | || |||| || | |||||| Sbjct 65286 AGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGT-TTAGATTCTCCCAATCG 65344 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 |||| |||| ||| |||||||| | ||||| || ||||| || || || ||| Sbjct 65345 CGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTA 65404 Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 ||||| | |||||| | | || |||||||| || ||| ||||||| Sbjct 65405 TACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTAT 65453 >seq8766 Length=69736 Score = 116 bits (128), Expect = 5e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| ||||| || | |||||||| || || || |||||| | | ||| | | || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | || || || |||||||| | ||| ||||| || || || || | ||| | Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT--ATTTTCAACAAGTAGGATTTTTC 66631 |||||| |||||||||||||| | ||| || |||||||| | ||| ||| |||| Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAA--CTGTCCCTTGGATTTTCAAAAGGTATGATCTTTC 54751 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 | ||||||||| |||||| | | ||| ||| || || || || ||||| Sbjct 54752 AAGAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 >seq11110 Length=291012 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | |||| ||| || | ||| | || | ||||||||||| |||||| Sbjct 226146 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACC 226205 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || || |||||| |||||| |||||| || || Sbjct 226206 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGA 226265 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || ||| || | || || ||| | ||||| || || Sbjct 226266 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAAT 226325 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 |||||| || |||||||| ||||| | ||||||||||||| Sbjct 226326 GCCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 65546 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 ||| ||||| || ||||| | ||||| ||||||||||| |||||||| || | | | || Sbjct 224896 GAGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 224955 Query 65606 AGAGATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 || ||| ||| ||| | |||||| ||||| | ||||||||| ||||||||||| Sbjct 224956 TGAAGTTTTTGCTGTCT-CCACAGGATAGTAATTCACATCTATAATCTTATTGAGATT 225012 >seq11555 Length=225698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | ||| || | ||||||| || || || |||||| | | ||| | || || Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | || || || || ||||| | ||| || || || | || | ||||||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||| |||||||||||||| | ||| | | ||| || | ||| ||| |||| | Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||||||||||||| || | ||| ||| || || || || || || Sbjct 13782 GTTTTAAAACCAAAGTAATCATATTCAAAATCACGATCATAGATTAT 13828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658076418820600