Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10330 114 1e-20 seq8798 98.7 1e-15 seq9990 96.9 3e-15 seq8641 96.9 3e-15 seq10212 89.7 5e-13 seq9253 89.7 5e-13 >seq10330 Length=49715 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGA 139608 || || || ||||||| || |||||||| || |||||||| || ||| || |||| Sbjct 15472 CGTAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTATAGTCAGCTAAT-GTGCGACC 15530 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || |||||||| || ||||| |||| ||||| ||||| || || || || ||||| || Sbjct 15531 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCTTCCTT 15590 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || ||| | | || | ||||| | | ||||||||||| ||| | Sbjct 15591 ATCCTGGATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTAAT 15650 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| || || || |||||||||||| Sbjct 15651 GGTCTTACCAGTCAAGGTCTTGACAAATATTTGCATA 15687 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| || || ||||| || || |||||||| || || | ||| || Sbjct 15933 AACCAAATGAAGAGTTGATTCTTTCTGGATATTATAATCAGCCAAAGTACGGCCGTCCTC 15992 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||| |||||| |||| || | |||||||| ||||| |||||||||||||| Sbjct 15993 TAACTGTTTTCCAGCAAAGATAAGTCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTG 16052 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||| | | |||||||||| ||| | ||||| Sbjct 16053 GATCTTAGCCTTAACGTTGTCGATAGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTT 16112 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| ||||| || ||||| Sbjct 16113 TCCGGTAAGAGTTTTAACGAAGATCTGCAT 16142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| ||||||||||| || || Sbjct 15232 CCACCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGCA 15291 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || ||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 15292 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 15351 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 15352 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCTACC 15411 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||||||| || || || || || |||||| Sbjct 15412 TCCAATGTGATGGTCTTGCCGGTCAGTGTCTTCACAAAGATCTGCATA 15459 >seq8798 Length=192640 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| || | ||| ||||| | || || ||||| ||||| || ||||| | Sbjct 20867 CCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCAGCC 20808 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| |||||||||||||| |||| | | |||||| || ||||| Sbjct 20807 AAGGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGAGGA 20748 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| | |||| ||| | | || | || || | | ||| || Sbjct 20747 ATGCCTTCCTTATC-TTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCGAC 20689 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| || | ||||| ||||| |||||||| Sbjct 20688 CTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 20641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || || || || || ||||| ||||| | Sbjct 21779 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCC 21720 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | || || |||||||| ||||| |||| || | || || || || || Sbjct 21719 AATGTCCGACCATCCTCTAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGG 21660 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | ||||| | | ||| || Sbjct 21659 ATCCCTTCCTTGTCC-TGAATCTTAGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCAAC 21601 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | |||||||| ||||| || || || |||||||||||| Sbjct 21600 CTCTAAGGTTATTGTCTTGCCTGTCAAAGTCTTGACAAATATTTGCATA 21552 >seq9990 Length=160576 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| |||||||| || || ||||| || || | || | || ||| Sbjct 158758 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGACCATCCTCG 158817 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| ||||| |||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 158818 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGG 158877 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | |||||| | | || || |||| ||| | |||||| Sbjct 158878 ATCTTGGCCTTCACGTTGTCAATTGTGTCAGAGCTTTCGACTTCAAGGGTTATAGTCTTG 158937 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | || || ||||| || |||||| || Sbjct 158938 CCGGTAAGTGTCTTCACGAAGATCTGCATACCT 158970 >seq8641 Length=178042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| |||||||| || || ||||| || || | || | || ||| Sbjct 1819 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGACCATCCTCG 1760 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| ||||| |||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 1759 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGG 1700 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | |||||| | | || || |||| ||| | |||||| Sbjct 1699 ATCTTGGCCTTCACGTTGTCAATTGTGTCAGAGCTTTCGACTTCAAGGGTTATAGTCTTG 1640 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | || || ||||| || |||||| || Sbjct 1639 CCGGTAAGTGTCTTCACGAAGATCTGCATACCT 1607 >seq10212 Length=148016 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| ||| || || || || ||||| || || Sbjct 127836 CCACCACGGAGACGGAGAACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCG 127777 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| |||||||| || || | |||| |||||||||||| || || Sbjct 127776 AGAGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTGGG 127717 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||| | | || | ||||| | || ||| ||| Sbjct 127716 ATGCCTTCCTTGTCTTGGATCTTAGCTTTCACATTGTCGATGGTGTCAGAGGACTCAACC 127657 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || || || | ||||| ||||| || ||||| Sbjct 127656 TCAAGTGTGATTGTTTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 127610 >seq9253 Length=129212 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || ||| | || || |||| ||| || ||||| || ||||| |||||| Sbjct 94857 CCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCG 94798 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| | ||||| || || |||||| || || ||||| || || Sbjct 94797 AGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGG 94738 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || ||| | | || | |||||| | | || ||| Sbjct 94737 ATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTACC 94678 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 94677 TCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 94631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495991357628000