Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9146 212 9e-50 seq11595 194 2e-44 seq8766 125 1e-23 seq11110 109 8e-19 seq11555 98.7 1e-15 >seq9146 Length=70564 Score = 212 bits (234), Expect = 9e-50 Identities = 584/883 (66%), Gaps = 14/883 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||||||||| || || ||||||||||||||||| |||||||| |||| | ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||| ||||||||||||| || ||| || | || | || | | || Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCAT 54064 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||||||||||| ||||| || ||||| |||| | |||| |||||||| | | Sbjct 54065 TAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAA 54124 Query 49848 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 |||||| || |||| | ||| ||| ||| || ||||| || | Sbjct 54125 CGCGCATGGAAGCGCGTCGCAT--ACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACG 54182 Query 49906 ATAGATCTAACGGTTTCTTCACTCGG--TGGATG-CAATAAATGTTTAAACATCAAACAT 49962 || || | ||| ||||| | | | | | ||| | | | || | | | || Sbjct 54183 ATTGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCAA 54239 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 |||||||| ||||| | || ||||||| | |||||||| || || || || | || Sbjct 54240 GCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCA 54299 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||| || || || || || ||||| || || || ||| || || |||||||| Sbjct 54300 GGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATA 54359 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCA 50141 ||||| || || || || || | || || || || | | | | ||| ||||| Sbjct 54360 CCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC-CATCGATCCA 54418 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 | ||||| | || ||||| | || ||||| || ||||| || || |||||| Sbjct 54419 AGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAG 54478 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 || | | | || ||| ||||||| | ||| ||||||| | ||||||||||| || || Sbjct 54479 ATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGA 54538 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 |||||| || ||||| || || ||||||||||| ||| | ||||| | | || || Sbjct 54539 ATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAAC 54598 Query 50322 TTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 |||| ||| ||||| ||| | ||| || || ||||| || || || |||| Sbjct 54599 ATCTG-ACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAAA 54657 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGA 50440 | || | || ||||| || || || ||| | |||| || | ||||||| Sbjct 54658 AAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCACGTC 54717 Query 50441 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 50500 || | |||| |||||||||||| | ||||| |||||||| || || || || |||| Sbjct 54718 CGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTACA 54777 Query 50501 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 | | |||||| | |||| || || || || ||| ||||| Sbjct 54778 TCTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq11595 Length=173172 Score = 194 bits (214), Expect = 2e-44 Identities = 401/589 (68%), Gaps = 6/589 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||| | || ||||||| | |||| ||||| || || || | | Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 || ||||| || || || || || ||||| || || || ||||| | || || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTA 50137 ||| ||||| || || || || || | || || | | | | | | ||| | Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATC-CATCGA 65045 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 ||||| | ||||| | || ||||| || ||||| || ||||| || ||| || Sbjct 65046 TCCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAA 65105 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 |||||| | | | || || ||||||| | ||||||||||| | ||||||||||| | Sbjct 65106 AGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCT 65165 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | |||||||| || ||||| || || || |||||||| ||| | ||||| | | | Sbjct 65166 CAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTT 65225 Query 50318 GCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 | || |||| ||| ||||| ||| | ||| || || ||||| || || || Sbjct 65226 GTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCG 65284 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCA 50436 || || || | || ||||| ||||| || |||| | |||| || | |||||| Sbjct 65285 AAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATCG 65344 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 |||| |||| |||||||||||| | ||||| || ||||| || || || ||| Sbjct 65345 CGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTA 65404 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 ||||| | |||||| | | || || |||||||| ||| ||||||| Sbjct 65405 TACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTAT 65453 >seq8766 Length=69736 Score = 125 bits (138), Expect = 1e-23 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| ||||| || | |||||||| || || || |||||| | | ||||| | || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 80394 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | || || ||||||||||| | ||| ||||| || || || || | ||| | Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT--ATTTTCAACAAGTAAGATTTTTC 80510 |||||| |||||||||||||| | ||| || |||||||| | ||| ||| |||| Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAA--CTGTCCCTTGGATTTTCAAAAGGTATGATCTTTC 54751 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 | ||||||||| |||||| | | ||| ||| || || || || ||||| Sbjct 54752 AAGAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | |||| ||| || | ||| | || | ||||||||| | |||||| Sbjct 54242 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGGACAATACC 54301 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| | || ||||||||| || ||| Sbjct 54302 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCTCGAATATTATGAACTGA 54361 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || ||| || | || ||||| || Sbjct 54362 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACATTCCTTAAGTGTTTCATAAAT 54421 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 |||||| ||||||||||| ||||| Sbjct 54422 GCCCTCAATGCTATCATCTTTCATG 54446 >seq11110 Length=291012 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | |||| ||| || | ||| | || | ||||||||||| |||||| Sbjct 226146 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACC 226205 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| ||||| |||||| || || Sbjct 226206 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGA 226265 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || || ||| | ||||| || || Sbjct 226266 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAAT 226325 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 |||||| ||||||||||| ||||| | ||||||||||||| Sbjct 226326 GCCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||| ||||| || ||||| | ||||| ||||||||||| |||||||| || | | | || Sbjct 224896 GAGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 224955 Query 79485 AGAAATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| ||| ||| | |||||| ||||| | ||||||||| ||||||||||| Sbjct 224956 TGAAGTTTTTGCTGTCT-CCACAGGATAGTAATTCACATCTATAATCTTATTGAGATT 225012 >seq11555 Length=225698 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||| || | ||||||| || || || |||||| | | ||||| || || Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | || || || || ||||| | ||| || || || | || | ||||||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| |||||||||||||| | ||| | | ||| || | ||| ||| |||| | Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||||||||| || | ||| ||| || || || || || || Sbjct 13782 GTTTTAAAACCAAAGTAATCATATTCAAAATCACGATCATAGATTAT 13828 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | || | | | || | |||||| || | || |||||||| ||||||| Sbjct 13274 CCTCCTTGGTCAACATAACGAACAGTATCATTATATACACGCAGCATTGGAACAATACCA 13333 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || |||| ||||| || || || || |||||| ||||| || || | ||| Sbjct 13334 TTAGATGATCCATTTGTGCCACGAATGTAACTTCCAGCTGCACGTATGTTGTGTACTGAA 13393 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || || || || | | |||| ||| || |||||| |||||||| || Sbjct 13394 ACACCAATACCTCCAGCTGATCTGCTTATTACTGCACAATCTTTTAATGTATCATATATA 13453 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| |||| || ||||| || ||| Sbjct 13454 CCCTCGATGCTATCATCCTTCATACATAGCAGAAAGCAACTA 13495 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 79077 CAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAA 79136 ||| ||||| ||| | ||||| || |||||||||||| | |||||||||| || | Sbjct 11470 CAAGACTCTACGACTATAAATGTTGGAGGTATATGGTTCAAAACATTCATTATTCCCAAG 11529 Query 79137 AATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA 79196 ||| ||| ||||| || |||||||| |||||||| | | | ||||| | || | Sbjct 11530 AATCTGACTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAGTTTCTGATTCC--A 11587 Query 79197 TGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 | | || | |||| |||||| |||| ||||| | || || |||| |||||| Sbjct 11588 TTCTTTGAAACCATATCCCTTAGAGCAACCCAGTCCCATCGGTCTGAAGGGATTACATTC 11647 Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAG 79285 || | ||| ||| |||||||| | || || Sbjct 11648 CACATATCTGGTTGAAGAATACCCTAACAAG 11678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718163618512600