Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq11595 165 8e-36 seq9146 145 7e-30 >seq11595 Length=173172 Score = 165 bits (182), Expect = 8e-36 Identities = 545/835 (65%), Gaps = 17/835 (2%) Strand=Plus/Plus Query 13598 TCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGG 13657 || ||| |||||||||||||||||||| | ||||||||| |||||| ||||||| || Sbjct 64594 TCNTTTCTCAAAGAAGTTAGTTTTACCCTGAAGTGATATAAGTTCCATCCAATCAAACGG 64653 Query 13658 ATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAA 13716 ||| | | ||| |||| ||| | | || || | || | ||||||||||| || Sbjct 64654 ATT-AGTCACACCGTACACCTTACCGTACCCAAGCGCACCTAACAGTCTATCAGCAACAA 64712 Query 13717 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 13776 |||| ||||| ||| |||||| |||| ||||| || | || |||| | Sbjct 64713 ACTCGATATACTGACTCATTAACTCACGGTTCATTCCAACTAACGCGCATGGAAGCGCGT 64772 Query 13777 TGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCAT 13836 | || ||| ||| |||| || || || || | || | | | | ||| | Sbjct 64773 CGCATACAAACTCTCTTTCAATCTCTACTGCGTCGCAGACGATTGATTTTACACGCTCCT 64832 Query 13837 TAGA-AGGAGGATATTTTAGAT-GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCC 13894 | || | || ||| | |||| | | || || ||||| || || | ||| Sbjct 64833 CCGTTAGCTTTGTTCTTAAGAGCGAGTAAAGA--AGGCAAGCGAAATCGCAGTGTAAGCC 64890 Query 13895 CTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttt 13954 || |||| | || | |||||||| || |||||||| ||||| | ||||||||| || Sbjct 64891 TTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTCTT 64950 Query 13955 tAACCAAAATATTGCAGCAAATGAC-CCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 || ||| || || | |||||| | ||||| ||||| || || ||||| ||| || | Sbjct 64951 TAGCCAGAAGATAG-AGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAAG 65009 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCCATTTTCTAGCCCATTC 14071 ||| | |||||| | || | ||| | || || ||||| | | ||||| | Sbjct 65010 CTACGATTCGTTCAGCGAAGG-----TTTGAGATCCATCGATCCACGTCATCGCCCACTG 65064 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT 14131 || ||| || || || || |||||||||||| ||| | || || ||||||| Sbjct 65065 AGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTCTTT 65124 Query 14132 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14191 || | || || ||||| | ||| | |||||||| ||||| || || || || || Sbjct 65125 GTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTCAAT 65184 Query 14192 AGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATC 14250 || || || || || | ||||||| | || ||||| |||||| || || |||| Sbjct 65185 CGCGATTTGGAATCCGTAAAAAGCA-CGCGCCTCCGAGACTTGTACATCTGACATGAATC 65243 Query 14251 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTT 14310 || | ||| || ||| || ||||| ||| || || || || | | || || Sbjct 65244 GAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGAAGAAAGCGAGGACGTGTT 65303 Query 14311 TAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGAT 14370 | ||||||| | || | | ||| || || | ||||||| | || | || |||| Sbjct 65304 TGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGTCCGTCTTGTGATAGAT 65363 Query 14371 CTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14425 ||||||| ||| | ||||| || || | ||||| |||||||| |||| || Sbjct 65364 CTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTATACATCTCCCAGAT 65418 >seq9146 Length=70564 Score = 145 bits (160), Expect = 7e-30 Identities = 393/593 (66%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || || |||||||| || | ||| || |||| | || ||||| ||||| || ||||| Sbjct 54237 CAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAA 54296 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| | |||||||| |||| ||| || |||| | ||| ||||| ||||| Sbjct 54297 CCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAG 54356 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || ||||| ||| || |||| | |||||| |||| | ||| | || || Sbjct 54357 ATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAG-----TTTGAGATCCAT 54411 Query 14052 --ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14109 ||||| | | ||||||| | ||| || ||| || || |||||||| || Sbjct 54412 CGATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGC 54471 Query 14110 TAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 ||| | || || |||||||| || | || |||||||| | ||| | ||||||| Sbjct 54472 GAAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACA 54531 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTTCCGAC 14228 | ||||| || || || || || || || ||||| || ||||| ||| | || ||||| Sbjct 54532 TCTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCA-CGCGCCTCCGAG 54590 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 ||| || || || |||| || | ||| || ||| || ||||| || Sbjct 54591 ACTTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCA 54650 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14348 || ||||| || | | || ||| || |||| | || | | ||| || || | |||| Sbjct 54651 GCGAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAA 54710 Query 14349 TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408 || | || | || ||||||||||| || | ||||| || || | ||||| Sbjct 54711 TCACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTC 54770 Query 14409 TTATACATTACCCATATTTCTTTATATAAT--ATAGGAAAAACTACA-AATCT 14458 || ||||| |||| | ||| | ||||| || ||||| | |||| ||||| Sbjct 54771 TTGTACATCTCCCAGA--TCTGTGGATAATGAATCGGAAACA-TACAGAATCT 54820 Score = 111 bits (122), Expect = 2e-19 Identities = 131/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 |||||| || || | ||| | |||||| || |||||||||||||||| ||||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||| ||||||| |||||| | ||| |||| ||| | | ||||| | | Sbjct 54005 TTCCATCCAATCAAACGGATTT-GTCACACCGTACACCTTACCGTACCCTAGCGAAACCA 54063 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13753 ||||||||| |||| |||||||||||| ||| ||||| |||| ||||| || Sbjct 54064 TTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCC 54118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479657749831000