Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9146 149 6e-31 seq11595 134 1e-26 >seq9146 Length=70564 Score = 149 bits (164), Expect = 6e-31 Identities = 576/891 (65%), Gaps = 27/891 (3%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 |||||| || || | ||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 |||||| |||| || |||||||| ||| |||| ||| | | ||||| | | Sbjct 54005 TTCCATCCAATCAAACGGATTTGTC-ACACCGTACACCTTACCGTACCCTAGCGAAACCA 54063 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 ||||||||| |||| |||||||||||| ||| ||||| |||| ||||| || | | Sbjct 54064 TTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCA 54123 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 |||| | || ||| ||| |||| || || || ||| | | Sbjct 54124 ACGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGA 54183 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTT-----AGATGTTTAAAAATTAAACA 13661 | ||| | || | | | || | || ||| | || | | | || Sbjct 54184 TTGACTTCACGCGCTCTTCCGTA--AGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCA 54238 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721 || |||||||| || | ||| || |||| | || ||||| ||||| || ||||| || Sbjct 54239 AGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACC 54298 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 13780 ||||| | |||||||| |||| ||| || |||| | | || | | ||||| ||||| | Sbjct 54299 AGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGA 54357 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT- 13839 | || ||||| ||| || |||| | |||||| |||| | ||| | | || Sbjct 54358 TACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAG-----TTTGAGATCCATC 54412 Query 13840 -ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| | | ||||||| | ||| || ||| || || ||||| ||||| Sbjct 54413 GATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCG 54472 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 || | ||| || |||||||| || | || |||||||| | ||| | |||||||| Sbjct 54473 AAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACAT 54532 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||||| || || || || || || || ||||| || |||||| | || || || Sbjct 54533 CTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGAC 54592 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 ||| || || || |||| || | || || ||| || ||||| || || Sbjct 54593 TTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGC 54652 Query 14079 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138 ||||| || | | || ||| || |||| | || | | ||| || || | |||||| Sbjct 54653 GAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATC 54712 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 | || | || ||||||||||| || | ||||| || || | ||||| || Sbjct 54713 ACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTT 54772 Query 14199 ATACATTACCCATATTTCTTTATATAAT--ATAGGAAAAACTACA-AATCT 14246 ||||| |||| | ||| | ||||| || ||||| | |||| ||||| Sbjct 54773 GTACATCTCCCAGA--TCTGTGGATAATGAATCGGAAACA-TACAGAATCT 54820 >seq11595 Length=173172 Score = 134 bits (148), Expect = 1e-26 Identities = 537/834 (64%), Gaps = 15/834 (2%) Strand=Plus/Plus Query 13386 TCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGG 13445 || ||| ||||| |||||||||||||| | ||||||||| |||||| |||| || || Sbjct 64594 TCNTTTCTCAAAGAAGTTAGTTTTACCCTGAAGTGATATAAGTTCCATCCAATCAAACGG 64653 Query 13446 ATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAA 13504 ||| | | ||| |||| ||| | | || || | ||| | ||||||||||| || Sbjct 64654 ATTAG-TCACACCGTACACCTTACCGTACCCAAGCGCACCTAACAGTCTATCAGCAACAA 64712 Query 13505 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 13564 |||| ||||| ||| |||||| |||| ||||| || | || |||| | Sbjct 64713 ACTCGATATACTGACTCATTAACTCACGGTTCATTCCAACTAACGCGCATGGAAGCGCGT 64772 Query 13565 TAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCAT 13624 || ||| ||| |||| || || || ||| | || || | | || | Sbjct 64773 CGCATACAAACTCTCTTTCAATCTCTACTGCGTCGCAGACGATTGATTTTACACGCTCCT 64832 Query 13625 TAG-AAGGAGGATATTTTAGA-TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCC 13682 | || | || ||| | |||| | | || || ||||| || || | ||| Sbjct 64833 CCGTTAGCTTTGTTCTTAAGAGCGAGTAAAGA--AGGCAAGCGAAATCGCAGTGTAAGCC 64890 Query 13683 CTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttt 13742 || |||| | || | |||||||| || |||||||| ||||| | ||||||||| || Sbjct 64891 TTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTCTT 64950 Query 13743 tAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 || ||| || || | ||| || | | ||||| ||||| || || ||||| ||| || | Sbjct 64951 TAGCCAGAAGATAG-AGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAAG 65009 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATTC 13859 ||| | |||||| | ||| | ||| | | || ||||| | | ||||| | Sbjct 65010 CTACGATTCGTTC----AGCGAAG-GTTTGAGATCCATCGATCCACGTCATCGCCCACTG 65064 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTT 13919 || ||| || || || || ||||| || ||| || | ||| || ||||||| Sbjct 65065 AGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTCTTT 65124 Query 13920 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTAT 13979 || | || || ||||| | ||| | |||||||| ||||| || || || || || Sbjct 65125 GTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTCAAT 65184 Query 13980 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCT 14039 || || || || || |||||| | || || || |||||| || || |||| Sbjct 65185 CGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGTACATCTGACATGAATCG 65244 Query 14040 TTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14099 || | || || ||| || ||||| ||| || || || || | | || ||| Sbjct 65245 AGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGAAGAAAGCGAGGACGTGTTT 65304 Query 14100 AATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATC 14159 ||||||| | || | | ||| || || | ||||||| | || | || ||||| Sbjct 65305 GATAAAGTGACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGTCCGTCTTGTGATAGATC 65364 Query 14160 TACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213 |||||| ||| | ||||| || || | ||||| |||||||| |||| || Sbjct 65365 TACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTATACATCTCCCAGAT 65418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478518716652600