Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8634 114 1e-20 seq9253 113 3e-20 seq9990 98.7 8e-16 seq8641 98.7 8e-16 seq11021 93.3 3e-14 >seq8634 Length=210279 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | || ||||||||| | || ||||| || | |||||||||| Sbjct 12017 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCG 12076 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | |||| || |||||||| ||||| || ||||||||||| ||||| | || Sbjct 12077 AGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGG 12136 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | |||| || || | | ||||||| | || || Sbjct 12137 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 12196 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT-TTTCTTA 43116 |||| ||||| || || || ||||| |||||||| || || ||||| | ||||| Sbjct 12197 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTCTCTTA 12251 >seq9253 Length=129212 Score = 113 bits (124), Expect = 3e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||||| | ||| | |||| ||||||||||| ||||| || |||||||||||| Sbjct 94809 TTGTAATCGGCGAGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGT 94750 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | |||||||| || |||| | |||| || || | | |||||| Sbjct 94749 TGATCCGGTGGGATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCT 94690 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || || |||| ||||| || || || ||||| |||||||| || || |||||| Sbjct 94689 GATGATTCTACCTCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATT 94630 Query 43111 TTCTT 43115 || || Sbjct 94629 TTGTT 94625 >seq9990 Length=160576 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || ||||| || | || |||||| || | ||||||||||| | Sbjct 159196 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 159255 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || ||||||||||| ||||||| ||| || || | || Sbjct 159256 AAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGA 159315 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| ||||| || ||| | || || || ||| |||||| ||| ||| || Sbjct 159316 ATACCCTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCAATGGTGTCG-GAGCTCTCCAC 159374 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || || || || | ||| ||||| || |||||||| Sbjct 159375 CTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 159422 >seq8641 Length=178042 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || ||||| || | || |||||| || | ||||||||||| | Sbjct 1381 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 1322 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || ||||||||||| ||||||| ||| || || | || Sbjct 1321 AAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGA 1262 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| ||||| || ||| | || || || ||| |||||| ||| ||| || Sbjct 1261 ATACCCTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCAATGGTGTCG-GAGCTCTCCAC 1203 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || || || || | ||| ||||| || |||||||| Sbjct 1202 CTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 1155 >seq11021 Length=502384 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| || | || ||||| |||| |||| |||||| ||||| || Sbjct 217114 TCCTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCGTCTTCCAGTTGTTTCCCGGCGAAT 217055 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| || || | || | ||||| || || ||| | ||||||| || Sbjct 217054 ATCAATCGCTGCTGGTCCGGTGGTATTCCTTCCTTGTCTTGAATCTTCGCTTTGACATTG 216995 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| | ||| || || | || ||||| ||||| ||||| |||||||| Sbjct 216994 TCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATAGTCTTTCCCGTTAGGGTTTTCACG 216935 Query 43099 AAAATTTGCAT 43109 || || ||||| Sbjct 216934 AAGATCTGCAT 216924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381315149359470