Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11595 203 4e-47 seq9146 190 3e-43 seq8766 116 5e-21 seq11110 96.9 5e-15 seq11555 95.1 2e-14 >seq11595 Length=173172 Score = 203 bits (224), Expect = 4e-47 Identities = 403/589 (68%), Gaps = 6/589 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||| | || || |||| | ||||| ||||| || || || | | Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || || || || ||||| || ||||| ||||| | | || || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| ||||| || || || || | | || || | | | ||| || Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATCCATCGAT 65046 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||| | ||||| | || ||||| || ||||| || ||||| || ||| ||| Sbjct 65047 CCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAAA 65106 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 ||||| | | | || || ||||||| | ||| ||||||| | ||||||||||| || Sbjct 65107 GAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTC 65166 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 |||||||| || ||||| || || || |||||||| ||| | ||||| | || || Sbjct 65167 AGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTG 65226 Query 42424 TACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAA 42482 ||| |||| ||| ||||| ||| | ||| || || ||||| || || || | Sbjct 65227 TACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCGA 65285 Query 42483 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG-TTAATTTATTCCAATCA 42541 | || || | || ||||| ||||| | |||| ||| | ||| || | |||||| Sbjct 65286 AGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCG-CCGTCGTTTAGATTCTCCCAATCG 65344 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 |||| |||| |||||||||||| | ||||| || |||||||| || || ||| Sbjct 65345 CGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTA 65404 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT 42650 ||||| | |||||| | | || ||||||||||| ||| ||||||| Sbjct 65405 TACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTAT 65453 >seq9146 Length=70564 Score = 190 bits (210), Expect = 3e-43 Identities = 579/882 (66%), Gaps = 12/882 (1%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||||||||| || || ||||||||||||||||| ||||| || |||| | ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 |||||| ||||||||||||| || ||| || | || | || | | || Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCAT 54064 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 |||||||| || | || || ||||| |||| | |||| |||||||| | | Sbjct 54065 TAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAA 54124 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 |||||| || | | ||| ||| ||| || |||||||| | || Sbjct 54125 CGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGAT 54184 Query 42013 AGATCTTACTGTTTCTTCACTCGG--TGGATA-CAATAAATGTTTAAACATCAAACATGC 42069 || | || ||||| | | | | | ||| | | | || | | | || || Sbjct 54185 TGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCAAGC 54241 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 |||||| ||||| | || || |||| | |||| ||| || || || || | || || Sbjct 54242 GAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGG 54301 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTC 42188 ||| || || || || || ||||| || || || |||| | | || || |||||||| | Sbjct 54302 CATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGATAC 54360 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACT 42248 |||| || || || || | | || || || || | ||| ||||| Sbjct 54361 CTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCCATCGATCCAAG 54420 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308 | ||||| | || ||||| | || ||||| || ||||| || || |||||||| Sbjct 54421 TCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGAGAT 54480 Query 42309 AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAAT 42368 | | | || ||| ||||||| | ||||||||||| | ||||||||||| || |||| Sbjct 54481 GATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAGAAT 54540 Query 42369 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 |||| || ||||| || || ||||||||||| ||| | ||||| | || || || | Sbjct 54541 GAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAACAT 54600 Query 42429 CTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAAC 42487 ||| ||| ||||| ||| | ||| || || ||||| || || || ||||| Sbjct 54601 CTG-ACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAAAAA 54659 Query 42488 GCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG-TTAATTTATTCCAATCATTGAT 42546 || | || ||||| || || | ||| ||| | ||| || | ||||||| Sbjct 54660 GCGAGAACGTGTTTGATGAAGTGACGTTC-ACCGTCGTTTAGATTCTCCCAATCACGTCC 54718 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 || | |||| |||||||||||| | ||||| ||||||||||| || || || ||||| Sbjct 54719 GTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTACAT 54778 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 | |||||| | |||| ||||| || || ||| ||||| Sbjct 54779 CTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq8766 Length=69736 Score = 116 bits (128), Expect = 5e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||| || | |||||||| || || || |||||| | | ||||| | || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 72477 GTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | || || ||||||||||| | ||| || || || || || || | ||| | Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTT--ATTTTCAACAAGTAGGATTTTTC 72593 ||| || |||||||||||||| | ||| || |||||||| | ||| ||| |||| Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAA--CTGTCCCTTGGATTTTCAAAAGGTATGATCTTTC 54751 Query 72594 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | ||||||||| |||||| | | ||| ||| || || || || ||||| Sbjct 54752 AAGAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 >seq11110 Length=291012 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| || || | |||| ||| || | ||| | || | ||||||||||| |||||| Sbjct 226146 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACC 226205 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || || || |||||| ||||| ||||| || || Sbjct 226206 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGA 226265 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || ||| || | || || ||| | ||||| || || Sbjct 226266 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAAT 226325 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 |||||| || |||||||| ||||| | ||||||||||||| Sbjct 226326 GCCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 71508 GAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATT 71567 ||| ||||| || ||||| | ||||| || |||||||| ||||||||||| | | | || Sbjct 224896 GAGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTT 224955 Query 71568 AGAAATTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 71624 ||| ||| ||| ||| | |||||| ||||| | ||||||||| ||||||||||| Sbjct 224956 TGAAGTTTTTGCTGTCT-CCACAGGATAGTAATTCACATCTATAATCTTATTGAGATT 225012 >seq11555 Length=225698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| | ||| || | ||||||| || || || |||||| | | ||||| || || Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || | || || || || ||||| | ||| || || || | || | ||||||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || |||||||||||||| | ||| | | ||| || | ||| ||| |||| | Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||||||| || | ||| ||| || || || || || || Sbjct 13782 GTTTTAAAACCAAAGTAATCATATTCAAAATCACGATCATAGATTAT 13828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671040920053400