Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq9253 104 2e-17 seq11704 89.7 5e-13 seq8798 89.7 5e-13 seq8726 89.7 5e-13 seq9990 87.8 2e-12 seq8641 87.8 2e-12 seq10330 86.0 6e-12 seq9269 86.0 6e-12 seq8634 86.0 6e-12 >seq9253 Length=129212 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || ||| | || ||||||| || |||||||| || |||||||||||| Sbjct 94857 CCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCG 94798 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||| || || |||||| || || ||||| || || Sbjct 94797 AGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGG 94738 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || ||| | | || | ||||| | | |||||| Sbjct 94737 ATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTACC 94678 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 94677 TCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 94631 >seq11704 Length=175292 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGT 143030 ||| || | ||||| ||||| ||||| || || |||||||| ||| | || || | Sbjct 63522 CAATACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCTAAG-GTTCTACCAT 63464 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||||||||||||| | || || ||||| ||||| || ||||| |||||||||| Sbjct 63463 CTTCAAGTTGTTTACCAGCAAATATAAGTCGTTGTTGATCTGGTGGTATACCTTCTTTGT 63404 Query 143091 C 143091 | Sbjct 63403 C 63403 >seq8798 Length=192640 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| || | ||| || || | || |||||||| || || |||||||| | Sbjct 20867 CCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCAGCC 20808 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || ||||||||||| |||| | | |||||| || ||||| Sbjct 20807 AAGGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGAGGA 20748 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || ||| ||| || | | || | || || | | || || Sbjct 20747 ATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCGACC 20688 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 20687 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 20641 >seq8726 Length=217380 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| |||||| | || || |||| || ||||| ||||| ||||||||||| Sbjct 142504 CCTCCTCTTAAACGGAGCACCAAGTGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCG 142563 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| ||||| || || || |||||| | |||||||| || || Sbjct 142564 AGTGTTCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 142623 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | ||| || Sbjct 142624 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCAGATGATTCAACC 142683 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 142684 TCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 142730 >seq9990 Length=160576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| ||||| || || || |||||||| || | || | || ||| Sbjct 158758 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGACCATCCTCG 158817 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| ||||| |||| ||||| ||||| || ||||| || ||||||||||| Sbjct 158818 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGG 158877 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | || | ||||| | | ||| ||||||| || | |||||| Sbjct 158878 ATCTTGGCCTTCACGTTGTCAATTGTGTCAGAGCTTTCGACTTCAAGGGTTATAGTCTTG 158937 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| | ||| || ||||| || |||||| || Sbjct 158938 CCGGTAAGTGTCTTCACGAAGATCTGCATACCT 158970 >seq8641 Length=178042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| ||||| || || || |||||||| || | || | || ||| Sbjct 1819 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGACCATCCTCG 1760 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| ||||| |||| ||||| ||||| || ||||| || ||||||||||| Sbjct 1759 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGG 1700 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | || | ||||| | | ||| ||||||| || | |||||| Sbjct 1699 ATCTTGGCCTTCACGTTGTCAATTGTGTCAGAGCTTTCGACTTCAAGGGTTATAGTCTTG 1640 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| | ||| || ||||| || |||||| || Sbjct 1639 CCGGTAAGTGTCTTCACGAAGATCTGCATACCT 1607 >seq10330 Length=49715 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||||| || |||||||| || || || ||||| || || | ||| || Sbjct 15933 AACCAAATGAAGAGTTGATTCTTTCTGGATATTATAATCAGCCAAAGTACGGCCGTCCTC 15992 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||| |||||| |||| || | |||||||| ||||| |||||||||||||| Sbjct 15993 TAACTGTTTTCCAGCAAAGATAAGTCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTG 16052 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | ||||| | | ||| || |||| || | ||||| Sbjct 16053 GATCTTAGCCTTAACGTTGTCGATAGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTT 16112 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||||| ||||| || ||||| Sbjct 16113 TCCGGTAAGAGTTTTAACGAAGATCTGCAT 16142 >seq9269 Length=281999 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGT 143030 ||| || | ||||| ||||| ||||| || ||||||||||| ||| | || || | Sbjct 49752 CAAGACAAGATGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCTAAA-GTTCTACCAT 49694 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| ||||||||| | || || | ||| ||||| || ||||| |||||||||| Sbjct 49693 CTTCAAGTTGCTTACCAGCAAATATGAGCCTTTGTTGATCAGGTGGTATACCTTCTTTGT 49634 Query 143091 C 143091 | Sbjct 49633 C 49633 >seq8634 Length=210279 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | || ||||||| || ||||| || || |||||||||||| Sbjct 12017 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCG 12076 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | |||||| || || | |||| || |||||||| || || Sbjct 12077 AGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGG 12136 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | ||| || Sbjct 12137 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 12196 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| || || | ||||| ||||| || ||||| Sbjct 12197 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506940154078800