Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11595 123 4e-23 >seq11595 Length=173172 Score = 123 bits (136), Expect = 4e-23 Identities = 374/561 (67%), Gaps = 20/561 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| ||||| || || || | || || || ||||| | ||||| || ||||| Sbjct 65418 ATCTGGGAGATGTATAAGAAAGCCGAAGCATCGTTCTGGACTGCTGAAGAAGTAGATCTA 65359 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||| ||||||||||| || | | || || || | ||||| Sbjct 65358 TCACAAGACGGACGCGATTGGGAGAATC---TAAACGACGGCGAACGTCACTTTATCAAA 65302 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| || | || ||||||||||| || ||||| | ||| Sbjct 65301 CACGTCCTCGCTTTCTTCGCTGCTTCAGATGGAATCGTTTTAGAGAATCTCGCTTCTCGA 65242 Query 125199 TTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTTT-ACGGATTCCAAATCATG 125255 ||| | ||| || || | || | |||| | ||||||||| |||||||||||||| | Sbjct 65241 TTCATGTCAGATGT--ACAAGTCTCGGAGGCG-CGTGCTTTTTACGGATTCCAAATCGCG 65185 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 |||||||| | || || || ||||| | || | || | || || ||| Sbjct 65184 ATTGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGATACTTATATCAAAGATAAC 65125 Query 125316 CAACGTAAACA-CATGCTCTTTAACGCAATCGACACGGTGCCGT-CTATACGTAAAAAGG 125373 || | | | ||| |||||| || || || || | || | | | || | |||| Sbjct 65124 AAAGAGAGAGATCAT-CTCTTTCGTGCTATTGAAACTATTCCTTGCGTTGCGAAGAAAG- 65067 Query 125374 CTCAATGGGTGATTCGGTGGATCGATG-ACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 |||| |||| ||| ||||||||||| | ||| ||||| | || || | || Sbjct 65066 CTCAGTGGGCGATGACGTGGATCGATGGATCTCAAACCTTCG----CTGAACGAATCGTA 65011 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCT 125491 || ||||| || || || |||||||| || ||||| |||||| | ||||| ||||| Sbjct 65010 GCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGCT-CTATCTTCTGGCT 64952 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||||| || ||||||||||| ||| | || | |||||||| || ||||||||||| Sbjct 64951 AAAGAAACGAGGACTCATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCTCGAGACGA 64892 Query 125552 GGGCCTACACTGTGACTTTGC 125572 ||| ||||||| || || || Sbjct 64891 AGGCTTACACTGCGATTTCGC 64871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740950681143400