Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8634 116 3e-21 seq9253 111 1e-19 seq8798 100 2e-16 seq11704 87.8 1e-12 seq8726 87.8 1e-12 seq10212 86.0 5e-12 seq9990 82.4 6e-11 seq8641 82.4 6e-11 >seq8634 Length=210279 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || || |||||||| || || || || || |||||||||||| Sbjct 12017 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCG 12076 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || |||||||||||||||| || ||| ||||||| || || || || ||| Sbjct 12077 AGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGG 12136 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || ||| ||| || Sbjct 12137 ATTCCTTCCTTGTCTTGGATCTTCGCT-TTCACATTGTCGATTGTGTCGGATGATTCAAC 12195 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| || || || || || || ||||| || || || ||||| Sbjct 12196 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12243 >seq9253 Length=129212 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || ||||| || |||||||||||| || |||| ||||||| Sbjct 94839 ACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTACCGTCTTCC 94780 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | ||||| || ||||| || ||| |||||||||||||| Sbjct 94779 AATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGGATTCCTTCTTTGTCTTGG 94720 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| | || || || || |||||| |||| || || || || Sbjct 94719 ATCTTCGCT-TTCACATTGTCGATTGTGTCTGATGATTCTACCTCTAGTGTTATTGTCTT 94661 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||| || || || ||||| || Sbjct 94660 CCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 94628 >seq8798 Length=192640 Score = 100 bits (110), Expect = 2e-16 Identities = 171/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||| |||| | ||| || || ||||| || ||||| || || |||||||| || Sbjct 20867 CCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCAGCC 20808 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||| | ||||| |||||| | || || | ||| ||||| || Sbjct 20807 AAGG-TACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGAGG 20749 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||| ||||| || || ||| ||||| ||| ||| | || |||||||| | || | Sbjct 20748 AATGCCTTCCTTATCTTGAATCTTTGC-CTTAACATTGTCGATGGTATCAGAGCTCTCGA 20690 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATA 15374 | || | || ||||| || || || || ||||| || ||||||||| || |||||| | Sbjct 20689 CCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGC--ATCTGAAAAAA 20632 Query 15375 AA 15376 || Sbjct 20631 AA 20630 >seq11704 Length=175292 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||| | ||| || || | |||||| || || ||||| || || |||||||| ||| Sbjct 63536 CCACCTCTAAGTCTCAATACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAATCAGCT 63477 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || |||| | ||||| | |||||| ||||| |||| | |||||||| || ||| Sbjct 63476 AAGG-TTCTACCATCTTCAAGTTGTTTACCAGCAAATATAAGTCGTTGTTGATCTGGTGG 63418 Query 15256 AATTCCTTCTTTGTC 15270 || ||||||||||| Sbjct 63417 TATACCTTCTTTGTC 63403 >seq8726 Length=217380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| || | | || || ||||| || || || ||||| ||||||||||| Sbjct 142504 CCTCCTCTTAAACGGAGCACCAAGTGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCG 142563 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| | ||| || || ||| | ||||| | || || || ||| Sbjct 142564 AGTGTTCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 142623 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || || ||| || Sbjct 142624 ATTCCTTCCTTGTCTTGGATCTTCGCT-TTCACATTGTCGATTGTGTCAGATGATTCAAC 142682 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 |||||||| || || || || || || ||||| || || || ||||| ||| Sbjct 142683 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 142734 >seq10212 Length=148016 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || || || |||||||| || ||| | | ||||||| Sbjct 127819 AACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGGCCGTCTTC 127760 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || ||| | ||||||||||| || || ||| || ||||| ||||| Sbjct 127759 AAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTG 127700 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| | || ||||| || || || || | || || |||| Sbjct 127699 GATCTTAGCT-TTCACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGTGTGATTGTTT 127641 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 |||| || || ||||| || || || ||||| |||| Sbjct 127640 TACCCGTTAGGGTTTTGACGAAGATCTGCATTTTTG 127605 >seq9990 Length=160576 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || || ||||| || ||||| || | | | || ||||| Sbjct 159439 AAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCCAAAGTCCTGCCGTCT 159498 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || ||| | ||||| | || ||||| ||| || || || || || Sbjct 159499 TCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT 159558 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || | || ||||| || | ||||| || || || ||||| Sbjct 159559 TGGATTTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCTACCTCCAAAGTGATGGTC 159618 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || |||||||||||| Sbjct 159619 TTTCCAGTCAAGGTTTTAACGAAAATTTGCATA 159651 >seq8641 Length=178042 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || || ||||| || ||||| || | | | || ||||| Sbjct 1138 AAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCCAAAGTCCTGCCGTCT 1079 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || ||| | ||||| | || ||||| ||| || || || || || Sbjct 1078 TCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT 1019 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || | || ||||| || | ||||| || || || ||||| Sbjct 1018 TGGATTTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCTACCTCCAAAGTGATGGTC 959 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || |||||||||||| Sbjct 958 TTTCCAGTCAAGGTTTTAACGAAAATTTGCATA 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362127489298815