Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9990 95.1 1e-14 seq8641 95.1 1e-14 seq8726 86.0 5e-12 >seq9990 Length=160576 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || |||||||| |||||||||||||| |||| || | ||| Sbjct 159211 AAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGACCATCC 159270 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| | || | ||||||||| ||| || | ||||||||||| Sbjct 159271 TCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCTTTGTCT 159330 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| || || | | | | || ||| |||| |||| |||||||| Sbjct 159331 TGGATTTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGCGTAATGGTC 159390 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || ||||| || || || |||||||| Sbjct 159391 TTACCAGTCAAAGTCTTCACGAAGATTTGCAT 159422 >seq8641 Length=178042 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || |||||||| |||||||||||||| |||| || | ||| Sbjct 1366 AAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGACCATCC 1307 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| | || | ||||||||| ||| || | ||||||||||| Sbjct 1306 TCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCTTTGTCT 1247 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| || || | | | | || ||| |||| |||| |||||||| Sbjct 1246 TGGATTTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGCGTAATGGTC 1187 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || ||||| || || || |||||||| Sbjct 1186 TTACCAGTCAAAGTCTTCACGAAGATTTGCAT 1155 >seq8726 Length=217380 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || | | ||||| ||| | ||| || |||||||| || ||||||||||| Sbjct 142504 CCTCCTCTTAAACGGAGCACCAAGTGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCG 142563 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| | |||| ||||| || || || || | || | ||||||||||||| || Sbjct 142564 AGTGTTCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 142623 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| || ||| ||| || | | ||| || || | || Sbjct 142624 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCAGATGATTCAACC 142683 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||| || || || || |||| ||||| || || || |||||||| Sbjct 142684 TCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 142733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414513608720710