Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq9990 98.7 7e-16 seq8641 98.7 7e-16 seq10330 84.2 2e-11 >seq9990 Length=160576 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || || ||| || |||||||| |||||| || ||| |||| Sbjct 159211 AAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGACCATCC 159270 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || || || ||||| ||||| | ||||||||| | || | ||| ||||| ||| Sbjct 159271 TCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCTTTGTCT 159330 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| || || | ||| || || | |||||| |||| |||||| || Sbjct 159331 TGGATTTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGCGTAATGGTC 159390 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||||||||| || |||||||| Sbjct 159391 TTACCAGTCAAAGTCTTCACGAAGATTTGCAT 159422 >seq8641 Length=178042 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || || ||| || |||||||| |||||| || ||| |||| Sbjct 1366 AAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGACCATCC 1307 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || || || ||||| ||||| | ||||||||| | || | ||| ||||| ||| Sbjct 1306 TCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCTTTGTCT 1247 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| || || | ||| || || | |||||| |||| |||||| || Sbjct 1246 TGGATTTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGCGTAATGGTC 1187 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||||||||| || |||||||| Sbjct 1186 TTACCAGTCAAAGTCTTCACGAAGATTTGCAT 1155 >seq10330 Length=49715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 || ||||||||| || || || |||||| || || ||||| || |||| || | Sbjct 15471 TCGTAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTATAGTCAGCTAATGTGCGACC 15530 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| || | || ||||| || || || | || |||||||| | || | |||||| || Sbjct 15531 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCTTCCTT 15590 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 ||| || || ||| || | ||| || || | |||||| || | ||||| Sbjct 15591 ATCCTGGATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTAAT 15650 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || ||||| |||||||||||||| Sbjct 15651 GGTCTTACCAGTCAAGGTCTTGACAAATATTTGCAT 15686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354726946073820