Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq9146 194 1e-44 >seq9146 Length=70564 Score = 194 bits (214), Expect = 1e-44 Identities = 582/892 (65%), Gaps = 21/892 (2%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| |||||| || || | ||| | |||||| |||||||| ||||| ||| Sbjct 53931 GACATAACAGAAGCTTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCT 53990 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC-- 12962 | || || ||| |||||| |||| || |||||| || || ||| |||| Sbjct 53991 TGTAGTGATATAAGTTCCATCCAATCAAACGGATTTGTCACACC---GTACACCTTACCG 54047 Query 12963 -ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 |||||| | | ||||| || ||||||||||| || ||||| |||||| ||| Sbjct 54048 TACCCTAGCGAAACCATTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCA 54107 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 | ||||||||| | || || | || || || ||| | | |||| || ||| Sbjct 54108 CGGTTCATTCCAACCAACGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCA 54167 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT------AGA 13135 || || ||| || || | ||| ||| |||| | | | || | | ||| Sbjct 54168 ACCGCGTCGCAGACGAT-TGACTTC--ACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGA 54224 Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCG 13195 | || | | | || || ||||||||||| || ||||| |||| | ||||| || Sbjct 54225 -GAGTAGAGA--AGGCAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCA 54281 Query 13196 TTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC 13255 ||||| || |||| ||| ||||| || |||||||| || | ||| || || | | ||| Sbjct 54282 TTTGAGAAAGTTAAACCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAACAAAAG 54341 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315 ||| || || || || |||||||| || || |||| | | |||| || | || Sbjct 54342 CTACCGGAGAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTT 54401 Query 13316 CTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375 | | | || ||||| | | ||||| | |||||| | ||||||| ||| Sbjct 54402 TGAGATCCA---TCGATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATA 54458 Query 13376 TTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATC 13435 |||| |||||| ||| | || || | | || ||| | ||| ||||| ||||| | Sbjct 54459 GTTTCAATTGCGCGAAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGA 54518 Query 13436 AATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACAT 13495 | | |||||||| || ||||||||||| || ||||| ||||| || || |||||| Sbjct 54519 AGGAGACTATACATCTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCA 54578 Query 13496 CTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATC 13555 | ||||| || || ||||| || || |||| || | || || ||| || Sbjct 54579 CGCGCCTCCGAGACTTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATT 54638 Query 13556 CCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGAC 13615 || || ||||| |||||||| || | ||| || || || | ||| || Sbjct 54639 CCATCTGATGCAGCGAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTT 54698 Query 13616 AACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAA 13675 | || |||||| | || | ||||| |||||| || || ||||||| || || Sbjct 54699 AGATTCTCCCAATCACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGAT 54758 Query 13676 GCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACA 13727 || | || ||||| |||||| ||| || | |||| ||| ||||||| Sbjct 54759 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGATAATGAATCGGAAACA 54810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430920865814430