Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq9990 104 2e-17 seq8641 104 2e-17 seq10330 96.9 3e-15 >seq9990 Length=160576 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| || | |||||| || |||||| || |||||||| ||||| Sbjct 159651 ACCACCTCGGAGCCTTAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 159710 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| ||| ||||||| |||||||| ||| || | |||| | |||||||||| || Sbjct 159711 CAAAGTACGCCCGTCCTCTAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCCGGAGG 159770 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || ||||| ||| ||||| ||| | | | || ||||| || | |||| Sbjct 159771 AATACCCTCCTTATCCTGGATTTTGGCCTTAACGTTGTCG--ATGGTGTCAGAGCTCTCC 159828 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || ||||||||||| || || ||||| ||||| Sbjct 159829 ACCTCAAGAGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAAATTTGCAT 159878 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| || || ||||| || ||||| || || ||||||||||| Sbjct 159879 ACCACCACGGAGCCTTAGAACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAATCAGC 159938 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||| |||||||| ||| || | || | | |||||||||| || Sbjct 159939 CAAAGTACGACCGTCCTCTAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 159998 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||| ||| ||||| ||| | | | || ||||| || | ||| Sbjct 159999 AATACCTTCCTTATCCTGGATTTTGGCCTTAACGTTGTCG--ATGGTGTCAGAGCTTTCC 160056 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || ||||||||||| || || || ||||||||| Sbjct 160057 ACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCATC 160107 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| || |||||||| |||||||| || | ||||| Sbjct 158530 ACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGTCCATCCTCA 158589 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| ||| || | || || |||||| Sbjct 158590 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGG 158649 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | || || || | |||| ||| | ||| ||||| || Sbjct 158650 ATCTTGGCCTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAGTGTGATGGTCTTC 158709 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||||||||| Sbjct 158710 CCGGTCAGTGTCTTCACAAAAATCTGCAT 158738 >seq8641 Length=178042 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| || | |||||| || |||||| || |||||||| ||||| Sbjct 926 ACCACCTCGGAGCCTTAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 867 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| ||| ||||||| |||||||| ||| || | |||| | |||||||||| || Sbjct 866 CAAAGTACGCCCGTCCTCTAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCCGGAGG 807 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || ||||| ||| ||||| ||| | | | || ||||| || | |||| Sbjct 806 AATACCCTCCTTATCCTGGATTTTGGCCTTAACGTTGTCG--ATGGTGTCAGAGCTCTCC 749 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || ||||||||||| || || ||||| ||||| Sbjct 748 ACCTCAAGAGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAAATTTGCAT 699 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| || || ||||| || ||||| || || ||||||||||| Sbjct 698 ACCACCACGGAGCCTTAGAACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAATCAGC 639 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || ||||||| |||||||| ||| || | || | | |||||||||| || Sbjct 638 CAAAGTACGACCGTCCTCTAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 579 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||| ||| ||||| ||| | | | || ||||| || | ||| Sbjct 578 AATACCTTCCTTATCCTGGATTTTGGCCTTAACGTTGTCG--ATGGTGTCAGAGCTTTCC 521 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || ||||||||||| || || || ||||||||| Sbjct 520 ACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCATC 470 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| || |||||||| |||||||| || | ||||| Sbjct 2047 ACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGTCCATCCTCA 1988 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| ||| || | || || |||||| Sbjct 1987 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGG 1928 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | || || || | |||| ||| | ||| ||||| || Sbjct 1927 ATCTTGGCCTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAGTGTGATGGTCTTC 1868 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||||||||| Sbjct 1867 CCGGTCAGTGTCTTCACAAAAATCTGCAT 1839 >seq10330 Length=49715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| || |||||||||||||||||| |||| ||| ||| || | ||||| Sbjct 15250 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAG-CAAGTGTGCGACCATCCTC 15308 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | ||||||||| ||| || | || ||||||||| Sbjct 15309 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCTTG 15368 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | ||||| || | ||| ||| | ||| ||||| || Sbjct 15369 GATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCTACCTCCAATGTGATGGTCTT 15428 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || |||||||| |||||||| Sbjct 15429 GCCGGTCAGTGTCTTCACAAAGATCTGCAT 15458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421191055201715