Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq11300 123 1e-23 seq11679 116 2e-21 seq10904 114 7e-21 seq9392 114 7e-21 seq8670 114 7e-21 seq11673 113 2e-20 seq9448 113 2e-20 seq8167 111 8e-20 seq11430 109 3e-19 seq11101 109 3e-19 seq8766 107 1e-18 seq8479 107 1e-18 seq8888 102 4e-17 seq8792 102 4e-17 seq9873 100 1e-16 seq8394 100 1e-16 seq8277 100 1e-16 seq6809 100 1e-16 seq8455 98.7 5e-16 seq9250 96.9 2e-15 >seq11300 Length=203144 Score = 123 bits (136), Expect = 1e-23 Identities = 87/98 (89%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||||| ||| |||||||||| | | |||||||| |||||||||||||||||| Sbjct 79726 AATAAAAAATTAAAGATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAG 79785 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 ||||||||||| |||||||||||||||||||| ||||| Sbjct 79786 CACGACGCTCTAACCAACTGAGCTAATGGGCC-TCGAC 79822 >seq11679 Length=237330 Score = 116 bits (128), Expect = 2e-21 Identities = 82/93 (88%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11441 AATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| || | ||||||||||| | | |||||||| |||||||||||||||||||| Sbjct 98113 AATAAAATTATAACATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 98172 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||| |||||||||||||||||||| || Sbjct 98173 CGACGCTCTAACCAACTGAGCTAATGGGCCATC 98205 >seq10904 Length=21463 Score = 114 bits (126), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 13259 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 13200 Query 11515 CTGAGCTAATGGGCCGTCGACGATTGT 11541 ||||||||||||||| || ||| |||| Sbjct 13199 CTGAGCTAATGGGCCATC-ACGTTTGT 13174 >seq9392 Length=29514 Score = 114 bits (126), Expect = 7e-21 Identities = 78/88 (89%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| | ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 8269 ATAAAAAAT---AGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACG 8325 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 8326 ACGCTCTAACCAACTGAGCTAATGGGCC 8353 >seq8670 Length=314248 Score = 114 bits (126), Expect = 7e-21 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 268244 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 268185 Query 11512 CAACTGAGCTAATGGGCCGTCG 11533 |||||||||||||||||| ||| Sbjct 268184 CAACTGAGCTAATGGGCCTTCG 268163 >seq11673 Length=156953 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||||| || ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 56259 ATTAAAAATAAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACG 56316 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 56317 ACGCTCTAACCAACTGAGCTAATGGGCC 56344 >seq9448 Length=112358 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 5291 CAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 5350 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| Sbjct 5351 CCAACTGAGCTAATGGGCC 5369 >seq8167 Length=72610 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| | || || |||| |||||||| | | |||||||| |||||||||||||||||||| Sbjct 14967 TAAAATAATATGAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 15025 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 15026 CGACGCTCTAACCAACTGAGCTAATGGGCC 15055 >seq11430 Length=358360 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 273152 AAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 273211 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 273212 AACTGAGCTAATGGGCC 273228 >seq11101 Length=62657 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| || ||||| || | ||||||||||| |||||||||||||||||||| Sbjct 20084 AAAAAAAAATTTAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 20025 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 20024 GACGCTCTAACCAACTGAGCTAATAGGCC 19996 >seq8766 Length=69736 Score = 107 bits (118), Expect = 1e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| || ||||| || | ||||||||||| ||||||||||||||||||||| Sbjct 1981 ATAAAAAACAGAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACG 1922 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||| ||||||||||||||| |||| || Sbjct 1921 ACGCTCTAACCAACTGAGCTAATAGGCCATC 1891 >seq8479 Length=52182 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 14905 AAATTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 14964 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 14965 CAACTGAGCTAATAGGCC 14982 >seq8888 Length=127578 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 60922 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 60863 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 60862 CAACTGAGCTAATAGGCC 60845 >seq8792 Length=161904 Score = 102 bits (112), Expect = 4e-17 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || ||||| || | ||||||||||| |||||||||||||||||||| Sbjct 78817 AATAAAAAG---AAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 78873 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 78874 GACGCTCTAACCAACTGAGCTAATAGGCC 78902 >seq9873 Length=71556 Score = 100 bits (110), Expect = 1e-16 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| |||||||| ||||| || | ||||||||||| |||||||||||||| Sbjct 59667 AGAATGTATAAAAAACG----TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTAT 59722 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 59723 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 59757 >seq8394 Length=163326 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 36717 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 36658 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 36657 TGAGCTAATAGGCC 36644 >seq8277 Length=129543 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 21856 AAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 21797 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 21796 AACTGAGCTAATAGGCC 21780 >seq6809 Length=7125 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 6634 TGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 6575 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 6574 TGAGCTAATAGGCC 6561 >seq8455 Length=182538 Score = 98.7 bits (108), Expect = 5e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||| ||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 126953 AAATTTGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 126894 Query 11512 CAACTGAGCTAAT 11524 ||||||||||||| Sbjct 126893 CAACTGAGCTAAT 126881 >seq9250 Length=105390 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| || || | ||||| || | |||||||| || |||||||||||||||||||||| Sbjct 37912 AAAATATAAATAATGGCCTATACAGGGATCGAATCTGTGACCTTCGCGTTATTAGCACGA 37853 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 37852 CGCTCTAACCAACTGAGCTAATAGGCC 37826 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261453865185340