Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq11663 152 8e-32 seq8191 113 7e-20 seq8347 109 9e-19 >seq11663 Length=261191 Score = 152 bits (168), Expect = 8e-32 Identities = 389/589 (66%), Gaps = 5/589 (1%) Strand=Plus/Minus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 |||||| | ||||| |||||||||| ||||| || ||||| || || ||| || Sbjct 132725 GAAACCAGTTTATGTCATTCTTGCTGCAGCTAAAGTCGGTGGGATTCATGCCAACAACAC 132666 Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702 || || || |||||||| | ||||| || ||||| ||||| ||| | || | Sbjct 132665 TTACCCAGCTGATTTCATTGGTTTGAATCTCCAAATCCAGACCAATGTCATTCACTCTTC 132606 Query 194703 ATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT 194762 || || || ||||| |||||| | ||||| ||||||||||| || || ||||| || Sbjct 132605 TTACATAAACGGTGTTAAAAAACTACTCTTTCTCGGTTCATCTTGTATTTACCCTAAATT 132546 Query 194763 TCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT-A 194821 | | |||||| | ||| | | || || ||||| | ||| ||||| | Sbjct 132545 TGCTCCTCAACCTATACCTGAGTCTTCTCTTCTCACTGGTCCTCTTGAACCGACTAATGA 132486 Query 194822 GTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCAGT 194881 || ||||||||||| ||||| || ||||| | |||||||||||| ||||| || Sbjct 132485 ATG-GTATGCAATTGCTAAGATTGCTGGTATTAAGATGTGTCAAGCTTATCGAATTCAAC 132427 Query 194882 ATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATTTTG 194941 || || |||| || || |||||||| ||||| ||||| |||||||| |||||| Sbjct 132426 ATCAATGGGATGCTATCTCTGGTATGCCTACAAATCTTTACGGTCCTAATGACAATTTTC 132367 Query 194942 ATATTAATAATGGTCATGTATTACCATCACTCATCGCTAAGTTCCACGGATCACTTGAGA 195001 | | ||| |||||| | ||| | || || | |||||| | | | | | Sbjct 132366 ACCCAGAGAATTCTCATGTGCTTCCAGCTCTTATGAGAAGGTTCCATGAAGCTAAAGCTA 132307 Query 195002 AGAGTGAGCACTGGGTTGTTAAGTTATGGGGTGATGGATCTCCGAAGAGAGAGTTCCTTC 195061 | | || | ||||| | | ||||| ||| || ||||||||| | | Sbjct 132306 ACAATGCAGAAGAAGTTGT---GGTTTGGGGAAGTGGTAGCCCTTTGAGAGAGTTTTTAC 132250 Query 195062 ATGTTGATGATCTAGCAGAAGCTTGTGTTAAGTGTATGCAAGAGTATGATGATGAAGAAC 195121 ||||||||||| |||| || ||||||||| | || | ||| || || | Sbjct 132249 ATGTTGATGATTTAGCTGATGCTTGTGTTTTCTTGATCGATCGGTACAGTGGATTTGAGC 132190 Query 195122 ACATTAATGTTGGCACAGGTGAAGATGTAACTATCAAAGAACTTGCTGA 195170 | ||||||| || | |||| || || |||||||||||| | ||||| Sbjct 132189 ATGTTAATGTAGGAAGTGGTGTTGAAGTGACTATCAAAGAATTGGCTGA 132141 >seq8191 Length=47849 Score = 113 bits (124), Expect = 7e-20 Identities = 218/322 (68%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 193831 CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGT 193890 |||||| ||||||||| ||||| |||||||| | |||||||| | | | | || | Sbjct 36851 CTCCACAATCAGAAACGACACCGTTTCATCCCAGATCTCCTTACGCAGCATCCAAATGCG 36792 Query 193891 ATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTA 193950 || | ||||| || ||| || | || | |||||| | |||| || || | Sbjct 36791 CTGCTCATTGGTACACAGTGAACTACAGAGAAGCTTATGGACTATTCGCTTGTAACGGAA 36732 Query 193951 TTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACAC 194010 | | ||||| || || || || | | ||||||| || || ||| | ||||| ||| Sbjct 36731 TATTATTCAACCATGAGTCACCTCGTCGTGGTGAGAACTTCGTGACTAGAAAGATCACAA 36672 Query 194011 AAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATG 194070 || || | |||| ||||| || |||| || || | ||||| ||| | | | Sbjct 36671 GAGCCTTGGGAAGGATCAAGGTTGGTTTGCAGACGAAGCTATTCCTTGGGAATTTACAAG 36612 Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130 | || ||||||||| |||| ||||||||| ||||| |||||||| ||||| || | Sbjct 36611 CGGCAAGAGATTGGGGATTCGCAGGGGATTATGTAGAAGCAATGTGGTTGATGTTACAGC 36552 Query 194131 AGGATGAACCCGATGATTATGT 194152 | || | || ||||||||||| Sbjct 36551 AAGAGAAGCCAGATGATTATGT 36530 >seq8347 Length=137323 Score = 109 bits (120), Expect = 9e-19 Identities = 224/333 (67%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 193831 CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGT 193890 |||||| ||||||||| ||||| |||||||| | |||||||| | | | | || | Sbjct 16988 CTCCACAATCAGAAACGACACCGTTTCATCCCAGATCTCCTTACGCAGCATCCAAATGCG 16929 Query 193891 ATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTA 193950 || | ||||| || |||||| | || | ||||| | | || || || | Sbjct 16928 CTGCTCATTGGTACACAGTGAATTACAGAGAAGCCTATGGTCTATATGCGTGTAACGGAA 16869 Query 193951 TTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACAC 194010 | || || || || || || || | | ||||||| || || ||| | ||||| ||| Sbjct 16868 TCCTTTTTAACCATGAGTCACCTCGTCGTGGTGAGAACTTCGTGACTAGGAAGATCACAA 16809 Query 194011 AAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATG 194070 || ||| | |||| ||||| ||||| | | || | ||||| ||| | | | Sbjct 16808 GAGCTTTGGGAAGGATCAAGGTTGGTTTACAAACAAAGCTATTCCTTGGAAATTTGCAAG 16749 Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130 | || ||||||||| |||| ||||| |||||||| |||||||| |||||||||| Sbjct 16748 CAGCAAGAGATTGGGGATTCGCAGGAGATTACGTTGAAGCAATGTGGTTGATGTTGCAAC 16689 Query 194131 AGGATGAACCCGATGATTATGTGATTGCTACAG 194163 | || | || |||||||| || | || |||| Sbjct 16688 AAGAGAAGCCAGATGATTACGTTGTGGCAACAG 16656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807436943635400