Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9146 118 1e-21 seq11595 114 1e-20 >seq9146 Length=70564 Score = 118 bits (130), Expect = 1e-21 Identities = 343/527 (65%), Gaps = 15/527 (3%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || || |||||||| || || ||||| || | | |||| |||||| || || |||||| Sbjct 54237 CAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAA 54296 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594 || ||||| | |||| || |||| ||| || ||||| |||| ||| || || ||||| Sbjct 54297 CCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAA 54355 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGT---AGATTCTTTATC 21651 || || ||||| ||| || || || | ||||||| | | || |||| | ||| Sbjct 54356 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCC---ATC 54412 Query 21652 CAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAATA 21709 | |||| | ||||||| ||| |||||| ||| ||| || || ||||| Sbjct 54413 GA---TCCAAGTCATCGCCCATTGTGC--TTTCTTCGTAACGCAAGGGATAGTTTCAATT 54467 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 || || ||||||| | | || | ||| | || |||| Sbjct 54468 GCGCGAAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTA 54527 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 ||||| |||||||| ||||| || ||||| || ||||||||||||||| | ||||| Sbjct 54528 TACATCTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCC 54587 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 || |||||| || || ||||| ||| | || || || |||||||| Sbjct 54588 GAGACTTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGAT 54647 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || || ||||| || | | | ||| || || | ||||| || ||| || | | Sbjct 54648 GCAGCGAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCC 54707 Query 21950 CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||||| | || | ||||| |||||||||||| | ||||| || Sbjct 54708 CAATCACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAA 54754 >seq11595 Length=173172 Score = 114 bits (126), Expect = 1e-20 Identities = 362/560 (65%), Gaps = 15/560 (3%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || || ||||| || || || ||||| || | | ||||| || || || || ||||| Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594 || ||||| | ||||| || |||| ||| || || || ||||| ||| || || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGT---AGATTCTTTATC 21651 || || ||||| ||| || || || | ||||||| || | || |||| | ||| Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATCC---ATC 65043 Query 21652 CAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTT--AATACAATCAATTGTATCAATA 21709 | |||| | ||||| | || |||||| || ||| ||| || |||||| Sbjct 65044 GA---TCCACGTCATCGCCCACTGAGC--TTTCTTCGCAACGCAAGGAATAGTTTCAATA 65098 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 || || ||||||| | | || | ||| | || |||| Sbjct 65099 GCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTA 65158 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 ||||| |||||||| ||||| || ||||| || || |||||||||||| | ||||| Sbjct 65159 TACATCTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCC 65218 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 || ||| || || || ||||| ||| | || || || |||||||| Sbjct 65219 GAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAA 65278 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || || || || || | | | ||| ||||| | |||||| || ||| || | | Sbjct 65279 GCAGCGAAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGTTTAGATTCTCC 65338 Query 21950 CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCC 22009 ||||| | |||| ||||| |||||||||||||| ||||| || || || Sbjct 65339 CAATCGCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCT 65398 Query 22010 TTTTTATACATAATCCAGAT 22029 || |||||||| |||||| Sbjct 65399 TTCTTATACATCTCCCAGAT 65418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531822909776600