Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9146 197 2e-45 seq11595 183 4e-41 seq8766 116 5e-21 seq11555 95.1 2e-14 seq11110 91.5 2e-13 >seq9146 Length=70564 Score = 197 bits (218), Expect = 2e-45 Identities = 585/885 (66%), Gaps = 18/885 (2%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||||||||| || || ||||||||||||||||| |||||||| |||| | ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||| ||||||||||||| || ||| || | || | || | | || Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCAT 54064 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||||||||||| || || || ||||| |||| | |||| |||||||| | | Sbjct 54065 TAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAA 54124 Query 33192 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 |||||| || |||| | ||| ||| ||| || ||||| || | Sbjct 54125 CGCGCATGGAAGCGCGTCGCAT--ACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACG 54182 Query 33250 ATAGATCTAACGGTTTCTTCACTCGG--TGGATG-CAATAAATGTTTAAACATCAAACAT 33306 || || | ||| ||||| | | | | | ||| | | | || | | | || Sbjct 54183 ATTGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCAA 54239 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 |||||||| ||||| | || ||||||| | |||||||| || || || || | || Sbjct 54240 GCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCA 54299 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGAT 33425 ||||| || || || || || ||||| || || ||| | || | | || || |||||||| Sbjct 54300 GGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGAT 54358 Query 33426 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTATCC 33484 ||||| || ||| || || | | || || || || | | | ||| |||| Sbjct 54359 ACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC-CATCGATCC 54417 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 | | ||||| | || ||||| | || ||||| || ||||| || || ||||| Sbjct 54418 AAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAAAGA 54477 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 ||| | | | || ||| ||||||| | ||| ||||||| | ||||||||||| || | Sbjct 54478 GATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCTCAG 54537 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 ||||||| || ||||| || || ||||||||||| ||| | ||||| | | || | Sbjct 54538 AATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTTGAA 54597 Query 33665 CTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 | |||| ||| ||||| || | ||| || || ||||| || || || ||| Sbjct 54598 CATCTG-ACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCGAAA 54656 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATT 33782 || || | || ||||| || || | ||| | | || |||| || | ||||||| Sbjct 54657 AAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGT-TTAGATTCTCCCAATCACG 54715 Query 33783 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 || | |||| |||||||||||| | ||||| |||||||| || || || || || Sbjct 54716 TCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTGTA 54775 Query 33843 CATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 ||| | |||||| | ||| || || || || ||| ||||| Sbjct 54776 CATCTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq11595 Length=173172 Score = 183 bits (202), Expect = 4e-41 Identities = 401/590 (68%), Gaps = 8/590 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||| | || ||||||| | |||| ||||| || || || | | Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAA 33422 || ||||| || || || || || ||||| || || || || || | | || || ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAGA-GCAAAAGCTACCGGAGAAGAA 64986 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTA 33481 ||| ||||| || ||| || || | | || || | | | | | ||| | Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATC-CATCGA 65045 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 ||||| | ||||| | || ||||| || ||||| || ||||| || ||| || Sbjct 65046 TCCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACGAA 65105 Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 |||||| | | | || || ||||||| | ||||||||||| | ||||||||||| | Sbjct 65106 AGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCT 65165 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33661 | |||||||| || ||||| || || || |||||||| ||| | ||||| | | | Sbjct 65166 CAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTT 65225 Query 33662 GTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 |||| |||| ||| ||||| || | ||| || || ||||| || || || Sbjct 65226 GTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGCG 65284 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATC 33779 || || || | || ||||| ||||| | |||| | | || |||| || | |||||| Sbjct 65285 AAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTCGCCGTCGT-TTAGATTCTCCCAATC 65343 Query 33780 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33839 |||| |||| |||||||||||| | ||||| || ||||| || || || || Sbjct 65344 GCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCTT 65403 Query 33840 ATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTAT 33889 |||||| | |||||| | || || |||||||| ||| ||||||| Sbjct 65404 ATACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTAT 65453 >seq8766 Length=69736 Score = 116 bits (128), Expect = 5e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| ||||| || | |||||||| || || || |||||| | | ||| | | || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | || || || |||||||| | ||| ||||| || || || || | ||| | Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT--ATTTTCAACAAGTAGGATTTTTC 63787 |||||| |||||||||||||| | ||| || |||||||| | ||| ||| |||| Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAA--CTGTCCCTTGGATTTTCAAAAGGTATGATCTTTC 54751 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 | ||||||||| |||||| | | ||| ||| || || || || ||||| Sbjct 54752 AAGAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | |||| ||| || | ||| | || | ||||||||| | |||||| Sbjct 54242 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGGACAATACC 54301 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || |||||| | || ||||||||| || ||| Sbjct 54302 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCTCGAATATTATGAACTGA 54361 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || ||| || | || ||| || | || ||||| || Sbjct 54362 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACATTCCTTAAGTGTTTCATAAAT 54421 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 ||||| ||||||||||| ||||| Sbjct 54422 GCCCTCAATGCTATCATCTTTCATG 54446 >seq11555 Length=225698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | ||| || | ||||||| || || || |||||| | | ||| | || || Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | || || || || ||||| | ||| || || || | || | ||||||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| |||||||||||||| | ||| | | ||| || | ||| ||| |||| | Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||||||||| || | ||| ||| || || || || || || Sbjct 13782 GTTTTAAAACCAAAGTAATCATATTCAAAATCACGATCATAGATTAT 13828 >seq11110 Length=291012 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | |||| ||| || | ||| | || | ||||||||||| |||||| Sbjct 226146 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACC 226205 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || |||||| ||||| |||||| || || Sbjct 226206 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGA 226265 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || ||| || | || || ||| | || || || || Sbjct 226266 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAAT 226325 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| ||||| | ||||||||||||| Sbjct 226326 GCCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622855977169400