Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq9269 118 1e-21 seq9253 116 4e-21 seq11704 109 5e-19 seq8848 89.7 5e-13 seq8379 89.7 5e-13 >seq9269 Length=281999 Score = 118 bits (130), Expect = 1e-21 Identities = 117/148 (79%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || ||||||||||| ||||| | | || || ||||| ||| Sbjct 49633 GACAAAGAAGGTATACCACCTGATCAACAAAGGCTCATATTTGCTGGTAAGCAACTTGAA 49692 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||| ||| | ||| || || |||||||| ||||| |||||| | ||||| ||| | Sbjct 49693 GATGGTAG-AACTTTAGCTGATTACAACATTCAGAAAGAGTCTACTCTTCATCTTGTCTT 49751 Query 26981 GAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| |||||||| || | |||||||| Sbjct 49752 GAGGCTTAGAGGTGG--TACTATGATTA 49777 >seq9253 Length=129212 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 |||||||||||| | || || ||||| |||| || || | || || | || |||| Sbjct 94624 AAACAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACACTAGAGGTAGA 94683 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 |||| ||||| ||||| | || ||| ||||| ||||||||||| || || || Sbjct 94684 ATCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAAGAAGGAATCCCACC 94743 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 |||||||| || | || | || ||| |||||| | ||||| | ||||| || ||| Sbjct 94744 GGATCAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGACGGTAGAACACTCGCCGA 94803 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || |||||||| || | ||| |||| || | || |||||||| Sbjct 94804 TTACAACATCCAGAAAGAATCAACGCTTCATTTGGTACTCCGTCTAAGAGGAGG 94857 >seq11704 Length=175292 Score = 109 bits (120), Expect = 5e-19 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || ||||||||| |||| || | | || |||||||| ||| Sbjct 63403 GACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTTGAA 63462 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||| ||| | ||| || || || || || ||||| |||||| | ||||| || | Sbjct 63463 GATGGTAG-AACCTTAGCTGATTACAATATCCAGAAAGAGTCTACTCTTCATCTTGTATT 63521 Query 26981 GAGACTTAGAGGAGGAAAAATATGATTA 27008 |||||||||||| || | |||||||| Sbjct 63522 GAGACTTAGAGGTGG--TACTATGATTA 63547 >seq8848 Length=112532 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| | || | || ||| Sbjct 94374 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTTGAGTCA 94433 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | |||||| ||||| ||||| ||||| || || || || Sbjct 94434 TCTGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGTATCCCACCGGAC 94493 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || || || | || | || ||| ||||| |||||||||| | || ||| ||||| Sbjct 94494 CAGCAGCGATTGATATTCGCCGGGAAACAGCTCGAAGATGGCCG-TACTCTAGCTGACTA 94552 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| ||| | ||||| ||||| Sbjct 94553 CAACATCCAGAAGGAATCGACTCTACATCTCGTCCT 94588 >seq8379 Length=157374 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| | || | || ||| Sbjct 116080 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTTGAGTCA 116139 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | |||||| ||||| ||||| ||||| || || || || Sbjct 116140 TCTGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGTATCCCACCGGAC 116199 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || || || | || | || ||| ||||| |||||||||| | || ||| ||||| Sbjct 116200 CAGCAGCGATTGATATTCGCCGGGAAACAGCTCGAAGATGGCCG-TACTCTAGCTGACTA 116258 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| ||| | ||||| ||||| Sbjct 116259 CAACATCCAGAAGGAATCGACTCTACATCTCGTCCT 116294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478592305874800