Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11555 105 2e-17 seq8766 104 6e-17 seq11600 102 2e-16 seq11110 98.7 3e-15 seq9146 98.7 3e-15 seq10149 86.0 2e-11 >seq11555 Length=225698 Score = 105 bits (116), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||||| ||| |||||||| ||| |||||||||||| | ||| ||| | || | Sbjct 13492 TTGCTTTCTGCTATGTATGAAGGATGATAGCATCGAGGGTATATATGATACATTAAAAGA 13433 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | || || || || || |||||||| || | ||||| | ||||| Sbjct 13432 TTGTGCAGTAATAAGCAGATCAGCTGGAGGTATTGGTGTTTCAGTACACAACATACGTGC 13373 Query 363726 A-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | | | | ||||||||||| |||||| |||| || ||||| | ||||| ||||| | Sbjct 13372 AGCTGGA-AGTTACATTCGTGGCACAAATGGATCATCTAATGGTATTGTTCCAATGCTGC 13314 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | | | |||||| | || || ||||| || || || || | ||||| Sbjct 13313 GTGTATATAATGATACTGTTCGTTATGTTGACCAAGGAGGTGGCAAAAGAAAAGG 13259 >seq8766 Length=69736 Score = 104 bits (114), Expect = 6e-17 Identities = 167/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||||| | ||||| || ||| ||| ||||| || | ||| ||||||||| | Sbjct 54461 TTGCTTTCTGATCTGCATGAAAGATGATAGCATTGAGGGCATTTATGAAACACTTAAGGA 54402 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| |||| ||| ||| || || |||||||| || | || ||| |||| || Sbjct 54401 ATGTGCTGTTATAAGCAAATCTGCTGGTGGTATTGGTGTTTCAGTTCATAATATTCGAGC 54342 Query 363726 A-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | | | | ||||||||||| |||||| ||| || ||||| | || || ||| | | Sbjct 54341 AACTGGA-AGTTACATTCGTGGCACAAATGGAACATCTAATGGTATTGTCCCAATGTTGC 54283 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| || | ||||||| | || || || || || ||||| ||| | |||||| Sbjct 54282 GTGTATTCAATGATACTGCTCGATATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 54228 >seq11600 Length=84080 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 |||| ||| | | ||||||||||| || | ||| | ||||| ||| || |||| Sbjct 22295 ATGTAATTAACAAGATTAAGAACAATCCTGATGATCGAAGGATTATAATGTCGGCTTGGA 22236 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTAT 111710 | ||| || | | ||||||||||| ||||| ||| | | ||| ||||| ||| Sbjct 22235 ATCCACCTGATCTTAAGCTGATGGCACTTCCTCCATGCCATATGTT-TGCACAGTTCTAT 22177 Query 111711 GTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGT 111770 || | || |||||||| ||||||||||| || || || ||||| ||||||||| Sbjct 22176 GTTGCAAATGGTGAACTTTCATGTCAAATGTATCAACGCTCAGCCGATATGGGTCTTGGT 22117 Query 111771 GTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || |||||||| ||||| ||| | || ||||| ||| | ||||||| Sbjct 22116 GTGCCGTTTAACATTGCCTCATACTCTCTTCTTACATGCATTCTCGCTCA 22067 >seq11110 Length=291012 Score = 98.7 bits (108), Expect = 3e-15 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| || | || ||||| || | |||||| |||| | Sbjct 226349 ATGAAAGATGATAGCATTGAGGGCATTTACGATACACTCAAAGAGTGTGCTGTTATAAGC 226290 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| || || |||||||| || | || ||| | |||||| | | | |||||||| Sbjct 226289 AAATCTGCTGGTGGTATTGGTGTTTCTGTTCATAATATCCGTGCATCTGGA-AGTTACAT 226231 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||| | ||||| || | |||| Sbjct 226230 TCGTGGCACAAATGGAACATCTAATGGTATTGTTCCAATGTTGCGTGTATTCAATGATAC 226171 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || ||||| || ||||| ||| | |||||| Sbjct 226170 TGCTCGATATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 226132 >seq9146 Length=70564 Score = 98.7 bits (108), Expect = 3e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 22782 AATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAA 22841 ||||||| |||||| | |||||||| ||| | || | |||| || || || | || Sbjct 54101 AATGAGTCAGTATATTGAGTTTGTTGCGGATAGATTAATGGTTTCGCTAGGGTACGGTAA 54042 Query 22842 GCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGAC 22901 | || || ||||| ||||| |||||||||||||| ||||| |||| || || Sbjct 54041 GGTGTACGGTGTGACAAATCCGTTTGATTGGATGGAACTTATATCACTACAAGGTAAAAC 53982 Query 22902 CAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || ||||||||| | ||||| || ||||||||||| ||||||| Sbjct 53981 TAACTTTTTCGAAAAACGTGTTGGGGATTACCAAAAAGCTTCTGTTATG 53933 >seq10149 Length=112605 Score = 86.0 bits (94), Expect = 2e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 111703 AGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTG 111762 |||||||||| || || || ||||| ||||||||||| || || || || || | Sbjct 60725 AGTTTTATGTTGCAGAAGGAGAACTCTCATGTCAAATGTATCAACGTTCAGCAGACATGG 60784 Query 111763 GTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATT 111822 | |||||||| || ||||| ||||| |||| | || |||||||| | | |||||| Sbjct 60785 GACTTGGTGTACCATTTAACATTGCTTCTTACTCTCTTCTTACTTGTATGTTAGCTCATG 60844 Query 111823 TTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 | |||| || ||||| || || || ||||| || ||||| ||||| || Sbjct 60845 TCTGTGATCTTGTTCCTGGTGATTTTATACATGTTATTGGTGATGCTCATGTGTA 60899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303157968661130