Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9253 105 6e-18 seq10330 100 2e-16 seq9269 96.9 3e-15 seq11021 93.3 4e-14 seq8798 89.7 4e-13 seq11704 87.8 2e-12 seq10212 86.0 5e-12 >seq9253 Length=129212 Score = 105 bits (116), Expect = 6e-18 Identities = 170/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 23976 TTTTAGCCAAA-CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT 24034 ||||||| ||| ||||||||| | || || ||||| |||| || || | || || | Sbjct 94615 TTTTAGCAAAAACAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACACT 94674 Query 24035 CGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 24094 || || || | ||||| ||||| | || ||| ||||| ||||||||||| Sbjct 94675 AGAGGTAGAATCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAAGAAGG 94734 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAA 24154 || || || ||||||||| || |||| | || ||| || ||| | ||||| | |||| Sbjct 94735 AATCCCACCGGATCAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGACGGTAGAAC 94794 Query 24155 CGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGG 24214 || |||||| ||||| || |||||||| || ||||||| || | | | ||||| Sbjct 94795 ACTCGCCGATTACAACATCCAGAAAGAATCAACGCTTCATTTGGTACTCCGTCTAAGAGG 94854 Query 24215 AGG 24217 ||| Sbjct 94855 AGG 94857 >seq10330 Length=49715 Score = 100 bits (110), Expect = 2e-16 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||| ||||| ||||||| |||| || ||| | Sbjct 15914 ATGCAAATCTTCGTTAAGACCTTAACAGGAAAGACGATTACTCTCGAGGTAGAGAGCTCT 15855 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| || || || || || || || || || Sbjct 15854 GACACCATCGACAACGTTAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCAGACCAG 15795 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 |||||| |||| | || ||| |||||||| ||||||| | ||| || | || ||||| | Sbjct 15794 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGATGGCCGAACACTT--GCTGATTACA 15737 Query 24169 ACATTCAAAAAGAATCTACAATTCAT 24194 |||| || || || |||||| ||||| Sbjct 15736 ACATCCAGAAGGAGTCTACACTTCAT 15711 >seq9269 Length=281999 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || |||||||| || || || | | || |||||||| ||| Sbjct 49633 GACAAAGAAGGTATACCACCTGATCAACAAAGGCTCATATTTGCTGGTAAGCAACTTGAA 49692 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| || ||| | ||| ||||| |||||||| ||||| ||||| ||||| | || || Sbjct 49693 GATGGTAG-AACTTTAGCTGATTACAACATTCAGAAAGAGTCTACTCTTCATCTTGTCTT 49751 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | ||||| || ||||| || Sbjct 49752 GAGGCTTAGAGGTGGTACTATGAT 49775 >seq11021 Length=502384 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| | ||||| |||| || ||| || Sbjct 216924 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACTATTACTCTCGAGGTTGAGTCCTCT 216983 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| ||||| ||||| || || || Sbjct 216984 GACACCATCGACAATGTCAAAGCGAAGATTCAAGACAAGGAAGGAATACCACCGGACCAG 217043 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || ||| || ||||| ||||| | | | | | || || ||| Sbjct 217044 CAGCGATTGATATTCGCCGGGAAACAACTGGAAGACGGCCGTACTCTGGCTGACTACAAC 217103 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || ||||| || ||||| Sbjct 217104 ATCCAGAAGGAATCGACGCTTCAT 217127 >seq8798 Length=192640 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||||||| | ||||| | || || ||| | Sbjct 21097 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACTATTACTTTGGAGGTTGAGAGCTCA 21156 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| ||||| || || || || || Sbjct 21157 GACACCATTGACAATGTCAAAGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGACCAG 21216 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || ||||| || || |||| | | | | || |||||||| Sbjct 21217 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGGA-CTTTGGCTGATTATAA 21275 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || |||| || || || |||| ||||| || Sbjct 21276 CATCCAGAAGGAATCAACCCTTCACTTGGTTCTACGATTAAGAGGTGG 21323 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || ||| | || || | ||||| ||| | Sbjct 20869 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTTGAGAGCTCT 20928 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || || ||||| ||||| || ||||||||||| Sbjct 20929 GACACTATTGACAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATCCCTCCCGATCAG 20988 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| || ||||||| |||| || || || ||| Sbjct 20989 CAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGAAGAACACTCGCTGACTACAAC 21048 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || | ||||| ||| Sbjct 21049 ATCCAGAAAGAGTCCACTCTCCATTTGGTG 21078 >seq11704 Length=175292 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || |||||||| |||| || | | || || ||||| ||| Sbjct 63403 GACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTTGAA 63462 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| || ||| | ||| ||||| || || || ||||| ||||| ||||| | || || Sbjct 63463 GATGGTAG-AACCTTAGCTGATTACAATATCCAGAAAGAGTCTACTCTTCATCTTGTATT 63521 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 ||| | ||||| || ||||| || Sbjct 63522 GAGACTTAGAGGTGGTACTATGAT 63545 >seq10212 Length=148016 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || || | || || ||| || Sbjct 127607 AAAATGCAGATCTTCGTCAAAACCCTAACGGGTAAAACAATCACACTTGAGGTTGAGTCC 127666 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | || ||| ||||| ||||| |||||||| || || ||| Sbjct 127667 TCTGACACCATCGACAATGTGAAAGCTAAGATCCAAGACAAGGAAGGCATCCCACCGGAT 127726 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | |||||| || ||| || || || ||||| | | | | || || || Sbjct 127727 CAGCAACGTTTGATTTTCGCCGGGAAACAGCTTGAAGACGGCCGTACTCTCGCTGACTAC 127786 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || ||||| || ||||||| || Sbjct 127787 AACATCCAGAAGGAATCAACGCTTCATTTGGT 127818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429874615215825