Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq8798 111 1e-19 seq9990 102 7e-17 seq8641 102 7e-17 seq9253 93.3 3e-14 >seq8798 Length=192640 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||| || |||||||||||||| ||||||||||| || | ||| | | ||| Sbjct 21536 AGTACTAAATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGTGTTCTCCCATCC 21477 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | ||||||| ||| |||||| || | || || ||||| Sbjct 21476 TCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCC 21417 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | ||| ||||| ||||| | Sbjct 21416 TGGATCTTGGC--CTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCCAAAGTGATTG 21359 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || ||||||||||||||||| Sbjct 21358 TTTTGCCGGTAAGGGTCTTGACAAAAATCTGCAT 21325 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || |||||||| || || ||||||||||| || | ||| | | || Sbjct 21080 AGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTTCTTCCATCT 21021 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | ||||||| ||| || || ||| | || || ||||| Sbjct 21020 TCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCC 20961 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | |||||| | ||| ||||| ||||||||| Sbjct 20960 TGGATTTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCCAAAGTGATGGTT 20901 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || |||||||| |||||||| Sbjct 20900 TTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 20869 >seq9990 Length=160576 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| |||||||||||||| |||| || | ||| Sbjct 158527 AGGACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGTCCATCC 158586 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| |||||| ||| | ||||||||||| Sbjct 158587 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCC 158646 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | ||||| | |||| |||| ||||||| Sbjct 158647 TGGATCTTGGC--CTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAGTGTGATGG 158704 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || |||||||||||||| Sbjct 158705 TCTTCCCGGTCAGTGTCTTCACAAAAATCTGCAT 158738 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || ||||||||||| || |||||||| ||| Sbjct 159424 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCC 159483 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || || |||| || | ||| || || || | || | || ||| |||||| || Sbjct 159484 AAAGTCCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 159543 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || |||| | ||| || | | | | ||||| | ||| Sbjct 159544 ATACCCTCCTTATCTTGGATTTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCTACC 159603 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| ||||| |||| ||||| || ||||| ||||| Sbjct 159604 TCCAAAGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 159650 >seq8641 Length=178042 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| |||||||||||||| |||| || | ||| Sbjct 2050 AGGACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGTCCATCC 1991 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| |||||| ||| | ||||||||||| Sbjct 1990 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCC 1931 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | ||||| | |||| |||| ||||||| Sbjct 1930 TGGATCTTGGC--CTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAGTGTGATGG 1873 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || |||||||||||||| Sbjct 1872 TCTTCCCGGTCAGTGTCTTCACAAAAATCTGCAT 1839 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || ||||||||||| || |||||||| ||| Sbjct 1153 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCC 1094 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || || |||| || | ||| || || || | || | || ||| |||||| || Sbjct 1093 AAAGTCCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 1034 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || |||| | ||| || | | | | ||||| | ||| Sbjct 1033 ATACCCTCCTTATCTTGGATTTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCTACC 974 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| ||||| |||| ||||| || ||||| ||||| Sbjct 973 TCCAAAGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 927 >seq9253 Length=129212 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||| | ||||||| ||| ||||| || || || || |||||||| ||||| Sbjct 94857 CCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCG 94798 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| ||||||||||| || || | || | |||||||| ||| || Sbjct 94797 AGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGG 94738 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || ||| ||||| | | | | ||||| | || Sbjct 94737 ATTCCTTCTTTGTCTTGGATCTTCGCT--TTCACATTGTCGATTGTGTCTGATGATTCTA 94680 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 || | || || || || || || || ||||| || || ||||||||||||| Sbjct 94679 CCTCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTGT 94626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405030162927850