Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq11704 98.7 7e-16 seq10330 89.7 4e-13 seq9990 89.7 4e-13 seq8798 89.7 4e-13 seq8641 89.7 4e-13 seq9269 84.2 2e-11 seq9253 82.4 5e-11 seq8634 82.4 5e-11 >seq11704 Length=175292 Score = 98.7 bits (108), Expect = 7e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| ||| |||| | | ||||| ||||||| |||||||| |||||||| ||| Sbjct 63403 GACAAAGAAGGTATACCACCAGATCAACAACGACTTATATTTGCTGGTAAACAACTTGAA 63462 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| | ||| | || ||||||||||| ||||| || |||||||||||| | ||||| Sbjct 63463 GATGGTAGAACCTTAGCTGATTACAATATCCAGAAAGAGTCTACTCTTCATCTTGTATT 63521 >seq10330 Length=49715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || ||||||| | || || || ||||| ||| | || |||| | | Sbjct 16142 ATGCAGATCTTCGTTAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 16083 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| || || || ||||| || | ||| | | || Sbjct 16082 GACACTATCGACAACGTTAAGGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 16023 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||||||||| ||||| |||| || ||| |||| ||||| ||| Sbjct 16022 CAGAGACTTATCTTTGCTGGAAAACAGTTAGAGGACGGCCGTACTTTGGCTGATTATAAT 15963 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| ||||| ||||||||| |||| Sbjct 15962 ATCCAGAAAGAATCAACTCTTCATTTGGT 15934 >seq9990 Length=160576 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || || || |||||||| | || ||| | | Sbjct 159422 ATGCAAATCTTCGTGAAGACTTTGACTGGTAAGACCATTACGCTCGAGGTGGAGAGCTCC 159363 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||||| || ||||||||| | || |||| Sbjct 159362 GACACCATTGACAACGTGAAGGCCAAAATCCAAGACAAAGAGGGTATTCCACCGGACCAG 159303 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| ||||| || || || ||| || |||||||||||||| Sbjct 159302 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 159243 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || ||||| |||| || ||| | || ||||| Sbjct 159242 ATTCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGG 159196 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || ||||||| || || || || ||||| || |||| || | | Sbjct 159650 ATGCAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACTTTGGAGGTAGAGAGCTCT 159591 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| ||||| ||||| |||||| | || |||| Sbjct 159590 GACACCATCGACAACGTTAAGGCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 159531 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| || || || ||||| ||||| | ||| |||| || |||||| Sbjct 159530 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTACAAT 159471 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || ||||| |||| || ||| | || ||||| Sbjct 159470 ATTCAAAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGG 159424 >seq8798 Length=192640 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | |||||| | || ||||| ||||| || | || || | | Sbjct 20641 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 20700 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| ||| ||||| || || | ||| | |||| Sbjct 20701 GATACCATCGACAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAG 20760 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||| ||||| ||||| || |||||| || |||| ||||||||| Sbjct 20761 CAAAGATTAATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACAAT 20820 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| || || || |||| | || ||| |||| || Sbjct 20821 ATTCAGAAAGAATCAACCCTGCACTTGGTTCTTCGATTAAGAGGTGG 20867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||||||||| ||||| ||||| ||||| ||||| ||| || |||| |||| Sbjct 21668 ACCAACAGAGACTCATCTTCGCTGGGAAACAGCTAGAGGATGGTCGGACATTGGCTGATT 21727 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||| || ||||||||||| |||||||| |||| | ||| | || || ||| Sbjct 21728 ACAACATCCAGAAGGAATCGACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGA 21780 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| |||||||||||||| || || ||||| ||| ||| |||| |||| Sbjct 21212 ACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGGACTTTGGCTGATT 21271 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | || || ||||||||||| || ||||| |||| |||| ||| |||| || Sbjct 21272 ATAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTACGATTAAGAGGTGG 21323 >seq8641 Length=178042 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || || || |||||||| | || ||| | | Sbjct 1155 ATGCAAATCTTCGTGAAGACTTTGACTGGTAAGACCATTACGCTCGAGGTGGAGAGCTCC 1214 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||||| || ||||||||| | || |||| Sbjct 1215 GACACCATTGACAACGTGAAGGCCAAAATCCAAGACAAAGAGGGTATTCCACCGGACCAG 1274 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | |||||||| ||||| || || || ||| || |||||||||||||| Sbjct 1275 CAGAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 1334 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || ||||| |||| || ||| | || ||||| Sbjct 1335 ATTCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGG 1381 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || ||||||| || || || || ||||| || |||| || | | Sbjct 927 ATGCAAATTTTCGTTAAAACCTTGACTGGAAAGACCATCACTTTGGAGGTAGAGAGCTCT 986 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| ||||| ||||| |||||| | || |||| Sbjct 987 GACACCATCGACAACGTTAAGGCGAAAATCCAAGATAAGGAGGGTATCCCACCGGACCAG 1046 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| || || || ||||| ||||| | ||| |||| || |||||| Sbjct 1047 CAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCAGGACTTTGGCTGACTACAAT 1106 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || ||||| |||| || ||| | || ||||| Sbjct 1107 ATTCAAAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGG 1153 >seq9269 Length=281999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| ||| |||| | ||||| || || || |||||||| || ||||| ||| Sbjct 49633 GACAAAGAAGGTATACCACCTGATCAACAAAGGCTCATATTTGCTGGTAAGCAACTTGAA 49692 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| | |||| | || |||||||| |||||||| || |||||||||||| | || || Sbjct 49693 GATGGTAGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACTCTTCATCTTGTCTT 49751 >seq9253 Length=129212 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||| || | ||||| || || |||||| | ||||| | ||| | ||||||||| Sbjct 94748 CAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGACGGTAGAACACTCGCCGATTAC 94807 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| ||||| || |||||| ||||| | ||| || ||||||| Sbjct 94808 AACATCCAGAAAGAATCAACGCTTCATTTGGTACTCCGTCTAAGAGGAGG 94857 >seq8634 Length=210279 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| || | || || || || |||||| ||||||| || ||| | ||||||||| Sbjct 12126 CAGCAGCGATTGATATTCGCCGGAAAACAATTAGAAGACGGAAGGACTCTCGCCGATTAC 12067 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| || |||||| |||| ||||| | ||||||| Sbjct 12066 AACATCCAGAAGGAATCAACGCTTCATTTGGTGCTACGTCTGAGAGGAGG 12017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358073668172110