Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq11600 84.2 2e-11 seq10149 82.4 7e-11 >seq11600 Length=84080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 20250 GAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCA 20309 ||| | |||| |||| ||||| | || |||||||||||| || || || | ||||| Sbjct 22072 GAGAATGCATGTAAG--AAGAGAGTATGA--GGCAATGTTAAACGGCACACCAAGACCCA 22127 Query 20310 TGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGAC 20369 | || | || | ||||||| ||||| ||||| ||||| | || ||||| || || Sbjct 22128 TATCGGCTGAGCGTTGATACATTTGACATGAAAGTTCACCATTTGCAACATAGAACTGTG 22187 Query 20370 ATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429 |||| || || || ||||| ||||||| | | || | || ||||| || ||| Sbjct 22188 CAAACATATGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGGTGGATTCCAAGCCGACA 22247 Query 20430 TAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 | || || |||| ||| | ||||| || || || Sbjct 22248 TTATAATCCTTCGATCATCAGGATTGTTCTTAAT 22281 >seq10149 Length=112605 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/188 (70%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 20179 TATATGCGTTTTGTAGATGTGGGCATCTCCCA--ACGTGTGAATAAACTCCCCGGGTCTA 20236 || ||| ||||| || | || ||||| || | || ||| ||||| || || || | Sbjct 60912 TACATGAGTTTTATACACATGAGCATCACCAATAACATGT--ATAAAATCACCAGGAACA 60855 Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 ||| || |||||||| | |||| |||| | || || || ||||||||||| || Sbjct 60854 AGATCACAGACATGAGCTAACATACAAGTAAGAAGAGAGTAAGAAGCAATGTTAAATGGT 60795 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || || | ||||||||| | || | ||||||| ||||| || || || || || || Sbjct 60794 ACACCAAGTCCCATGTCTGCTGAACGTTGATACATTTGACATGAGAGTTCTCCTTCTGCA 60735 Query 20357 ACATAAAA 20364 |||||||| Sbjct 60734 ACATAAAA 60727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441308166470600