Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8634 98.7 8e-16 seq9253 93.3 3e-14 seq8726 91.5 1e-13 >seq8634 Length=210279 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/116 (80%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||| || ||||||| ||||||||| |||||||| ||||||||||| | Sbjct 12016 ACCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATC-GG 12074 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | ||| | |||| || ||||| || ||||| ||||||| |||||||||||| Sbjct 12075 CGAGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCC 12130 >seq9253 Length=129212 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||| || || || |||| ||||||||| || ||||| ||||||||||| || Sbjct 94858 ACCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGC 94799 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || |||| |||||||| || ||||| || |||| ||||| |||||| || Sbjct 94798 GAGTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGG 94739 Query 34020 CACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 | | |||||||| || || || | | || || | | || | |||| Sbjct 94738 GATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTG----TCGATTGTGTCTGATGATT 94683 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | |||||||| || || ||||| |||||||| ||||| |||||||| Sbjct 94682 CTACCTCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 94628 >seq8726 Length=217380 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||| | || ||||||| |||||||| ||||| || ||||||||||| || Sbjct 142503 ACCTCCTCTTAAACGGAGCACCAAGTGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGC 142562 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || |||| |||| |||||| ||||| || |||| | |||||||||| || Sbjct 142563 GAGTGTTCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGG 142622 Query 34020 CACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 | | || ||||| || || || | | || || | | |||| |||| Sbjct 142623 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG----TCGATTGTGTCAGATGATT 142678 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || | |||||||| || || ||||| |||||||| ||||| ||||||||| Sbjct 142679 CAACCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 142734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397005708795430