Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9146 156 9e-33 seq11595 154 3e-32 seq9186 93.3 9e-14 seq11663 89.7 1e-12 seq8347 86.0 1e-11 >seq9146 Length=70564 Score = 156 bits (172), Expect = 9e-33 Identities = 573/878 (65%), Gaps = 31/878 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || || || ||||| | || ||||| ||||| ||||| || | ||| | || ||| Sbjct 54808 TTTCCGATTCATTATCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCATTCTGG 54749 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGCGAGAAACTCAATG 242992 ||| |||| ||||| ||| | | || |||| ||| || ||| ||||| || || | Sbjct 54748 ACCGCCGAAGAAGTAGATCT-ATCACATGACGGACGT-GATTGG---GAGAATCTAAACG 54694 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||| |||||||| |||||||||||| |||| | ||||||||| | || ||||| || | Sbjct 54693 ACGGTGAACGTCACTTCATCAAACACGTTCTCGCTTTTTTCGCTGCATCAGATGGAATCG 54634 Query 243053 TGATGGAAAATC-TGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 243110 | | || |||| ||| | | || ||| || || || | ||||| || Sbjct 54633 TTTTAGAGAATCTTGCTTCTCGA--TTCATGTCAGATGTTCAAGTCTCGGAGGCGCGTGC 54576 Query 243111 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTC 243166 ||||| | | |||| ||| | ||| ||| |||||||| ||| ||| | Sbjct 54575 TTTTTACGGATTTCAAATCGCGATTGA--GAA--TATTCATTCTGAGATGTATAGTCTCC 54520 Query 243167 TTATCGACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCT-TTTCGACGCCATCGAA 243225 || |||| | ||| |||| | ||||| || | | || ||||| ||| || ||| Sbjct 54519 TTCTCGATACATATATCAAAGATAATAAAGAGAGAGATCATCTCTTTCG-CGCAATTGAA 54461 Query 243226 AACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAA 243285 | || || ||| || || ||| ||||||| || ||| | || | || Sbjct 54460 ACTATCCCTTGCGTTACGAAGAAAGCACAATGGGCGATGACTTGGATCGATGGATCTCAA 54401 Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 | |||||||| || |||| || | | || ||||||||||| | || ||||| || Sbjct 54400 ACTTTTGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGC 54341 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 || || | ||||| ||||| ||| |||| | |||||||| | | | || || Sbjct 54340 TTTTGTTCAATCTTCTGGCTAAAGAAACGAGGTCTCATGCCTGGTTTAACTTTCTCAAAT 54281 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 || | ||| ||| ||||| ||| | ||| | |||| | ||| | || || | Sbjct 54280 GAACTAATCTCTCGAGACGAAGGCTTACACTGTGATTTCGCTTGCCTTCTCTACTCTCTG 54221 Query 243466 CTCCAGAAC-AAGCTACCATTCGAAA---CG-GTCAAACAAATCATCACAGAAGCAGTTG 243520 | ||||| ||||| | || || || || || |||| || || || |||| Sbjct 54220 -TTGAGAACGAAGCT----TACGGAAGAGCGCGTGAAGTCAATCGTCTGCGACGCGGTTG 54166 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTG 243580 ||| ||||| || || | |||||||| |||||||| | | |||| |||||| || Sbjct 54165 AAATCGAAAGAGAGTTTGTATGCGACGCGCTTCCATGCGCGTTGGTTGGAATGAACCGTG 54106 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | || ||| | ||||| || || || || || || | | | | |||| || || | Sbjct 54105 AGCTAATGAGTCAGTATATTGAGTTTGTTGCGGATAGATTAATGGTTTCGCTAGGGTACG 54046 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 || |||||| | || || |||| | ||||| || || || || ||||| | Sbjct 54045 GTAAGGTGTACGGTGTGACAAATCCGTTTGATTGGATGGAACTTATATCACTACAAGGTA 53986 Query 243701 AAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||||||||| |||||||| ||||| | ||||| ||| Sbjct 53985 AAACTAACTTTTTCGAAAAACGTGTTGGGGATTACCAA 53948 >seq11595 Length=173172 Score = 154 bits (170), Expect = 3e-32 Identities = 559/858 (65%), Gaps = 29/858 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| || || || || | || ||||| ||||||||||| || | ||| | || ||| Sbjct 65439 TTCCCAATTCACTACCCACAGATCTGGGAGATGTATAAGAAAGCCGAAGCATCGTTCTGG 65380 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || | || ||||| ||| | | || |||| ||| ||| ||||| || || || Sbjct 65379 ACTGCTGAAGAAGTAGATCT-ATCACAAGACGGACGCGATTGG---GAGAATCTAAACGA 65324 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 || ||||||||| || ||||||||| | || | ||| ||||| | || ||||| || || Sbjct 65323 CGGCGAACGTCACTTTATCAAACACGTCCTCGCTTTCTTCGCTGCTTCAGATGGAATCGT 65264 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGCAA 243111 | || ||||| || | | || ||| || ||| || | ||||| || Sbjct 65263 TTTAGAGAATCTCGCTTCTCGA--TTCATGTCAGATGTACAAGTCTCGGAGGCGCGTGCT 65206 Query 243112 TTTTATGCTTACCAAAC----ATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCT 243167 ||||| | | ||||| ||| | |||| || |||||||| ||| ||| || Sbjct 65205 TTTTACGGATTCCAAATCGCGATTGA--GAAT--ATTCATTCTGAGATGTATAGTCTCCT 65150 Query 243168 TATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCT-TTTCGACGCCATCGA 243224 | |||| | |||| ||| ||| | ||||| || | | || ||||| || || || Sbjct 65149 TCTCGATAC--TTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGT-GCTATTGA 65093 Query 243225 AAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAA 243284 || ||||| ||| || || || | ||||| || |||| | || | | Sbjct 65092 AACTATTCCTTGCGTTGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGATGGATCTCA 65033 Query 243285 ATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | | || ||||| || |||| || | | || ||||||||||| | || ||||| || Sbjct 65032 AACCTTCGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAG 64973 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 || ||| | ||||| ||||| ||| ||| | |||||||| | | | || || Sbjct 64972 CTTTTGCTCTATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGATTAACTTTCTCAAA 64913 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||||| ||| ||| ||||| ||| | ||| | |||| | ||| | || || Sbjct 64912 CGAGTTAATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCTTGCCTTCTTTACTC--- 64856 Query 243465 GCTCC--AGAACAA-GCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 |||| ||||||| |||| | || || ||| |||| || || ||||| || Sbjct 64855 GCTCTTAAGAACAAAGCTAACGGAGGAGCGTGTAAAATCAATCGTCTGCGACGCAGTAGA 64796 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | |||| || || | |||||||| |||||||| | | |||| |||||| ||| Sbjct 64795 GATTGAAAGAGAGTTTGTATGCGACGCGCTTCCATGCGCGTTAGTTGGAATGAACCGTGA 64736 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 | ||| | ||||| ||||| || || || || | | || |||||||| || | Sbjct 64735 GTTAATGAGTCAGTATATCGAGTTTGTTGCTGATAGACTGTTAGGTGCGCTTGGGTACGG 64676 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 || |||||| | || || |||| | ||||| || || || ||||| || || Sbjct 64675 TAAGGTGTACGGTGTGACTAATCCGTTTGATTGGATGGAACTTATATCACTTCAGGGTAA 64616 Query 243702 AACTAACTTCTTCGAAAA 243719 |||||||||||| || || Sbjct 64615 AACTAACTTCTTTGAGAA 64598 >seq9186 Length=113070 Score = 93.3 bits (102), Expect = 9e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 30996 CTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATACCGAACACTTTTCGAATCTCTTCCG 31055 ||||||||||||| || |||| ||||||| ||| ||| | | |||||||| || | Sbjct 85881 CTTCTTCTTCCTCAGGAGTGAAGTCGTTTTTGATGTTGAAGGTTGTGCGAATCTCGTCTG 85822 Query 31056 GAGtttttccttttattttttCAGCGATAGCTTGACATAGAACATCAAGCATACTCTTTA 31115 ||||||| ||||| || | ||||| | | ||||||| | ||||| | |||||| | Sbjct 85821 GAGTTTTGCCTTTGATCATATCAGCTACTGTTTGACATGTTAGGTCAAGTAAACTCTTGA 85762 Query 31116 TGTTCAAGAAATTCGC 31131 |||||||| |||| || Sbjct 85761 TGTTCAAGTAATTAGC 85746 >seq11663 Length=261191 Score = 89.7 bits (98), Expect = 1e-12 Identities = 273/422 (65%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 149077 CATTGTGAACTTTCGCTTCGCAGAATTTTCTGATCAGAACCGGGAACACGTGACCGTTAT 149136 |||||| | |||| ||||| ||| |||| || ||| | || | ||| ||| || | Sbjct 132301 CATTGTTAGCTTTAGCTTCATGGAACCTTCTCATAAGAGCTGGAAGCACATGAGAATTCT 132360 Query 149137 TAAGATCGTATCGGTCATTTGGACCGCTGAGATTCGTCGGCATGACTGAGACGAAATTAC 149196 | | | |||||| |||||| ||||| || ||||| | |||| || | Sbjct 132361 CTGGGTGAAAATTGTCATTAGGACCGTAAAGATTTGTAGGCATACCAGAGATAGCATCCC 132420 Query 149197 ATCCATATTGTTTTCTGTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGT 149256 || || ||| ||| ||||| | |||||||| || || || || || || || || | Sbjct 132421 ATTGATGTTGAATTCGATAAGCTTGACACATCTTAATACCAGCAATCTTAGCAATTGCAT 132480 Query 149257 ATGGTTTGTTAGTGGGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTGATAGGATTTT 149316 | || ||||| ||||| ||| || || | ||| | || ||||| | Sbjct 132481 ACCATTCATTAGTCGGTTCAAGAGGACCAGTGAGAAGAGAAGACTCAGGTATAGGTTGAG 132540 Query 149317 GAGCTTCTTTTGGGTAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACA 149376 |||| ||| |||||||| ||| ||||||||| | |||||||| || ||| | Sbjct 132541 GAGCAAATTTAGGGTAAATACAAGATGAACCGAGAAAGAGTAGTTTTTTAACACCGTTTA 132600 Query 149377 TTTTGGACGCATGAATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCC 149436 | | || | ||||||||||| ||||| || ||||| ||| ||||| | Sbjct 132601 TGTAAGAAGAGTGAATGACATTGGTCTGGATTTGGAGATTCAAACCAATGAAATCAGCTG 132660 Query 149437 CGAAGGAGTTGTTCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTATTCTG 149496 | | | |||||| || ||||| || || ||||| || || || |||| || || ||| Sbjct 132661 GGTAAGTGTTGTTGGCATGAATCCCACCGACTTTAGCTGCAGCAAGAATGACATAAACTG 132720 Query 149497 GT 149498 || Sbjct 132721 GT 132722 >seq8347 Length=137323 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 68690 AAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGA 68749 |||||||||||||| || |||||||| |||||||||||||||||| |||||||||| Sbjct 16744 AAGAGATTGGGGATTCGCAGGAGATTACGTTGAAGCAATGTGGTTGATGTTGCAACAAGA 16685 Query 68750 TACTCCGGATGACTATGTGATTGCAACAG-GGAA 68782 | || ||||| || || | ||||||| |||| Sbjct 16684 GAAGCCAGATGATTACGTTGTGGCAACAGAGGAA 16651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102714459435250