Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9146 105 8e-18 seq11595 96.9 4e-15 >seq9146 Length=70564 Score = 105 bits (116), Expect = 8e-18 Identities = 137/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| |||||||| ||||| | || ||||||||||| || ||| Sbjct 54258 CCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGGCATGAGACCTCGTTTC 54317 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | |||||| ||| ||||||||||| || || ||||| ||||| Sbjct 54318 TTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 54377 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || || |||||||| | | || | || | ||| |||||||||| || Sbjct 54378 GCTACGATTCGTTCAGCAAAAGTTTGAGA---TCCATCGATCCAAGTCATCGCCCATTGT 54434 Query 126245 GCCTTTTTC 126253 || || ||| Sbjct 54435 GCTTTCTTC 54443 >seq11595 Length=173172 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | || || ||||| | ||| |||||||| || || ||| Sbjct 64889 CCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTC 64948 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | ||||| ||| ||||||||||| || || ||||| ||||| Sbjct 64949 TTTAGCCAGAAGATAGAGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 65008 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || || ||||| |||| | || | || | |||| ||||||||||||| Sbjct 65009 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCATCGATCCACGTCATCGCCCACTGA 65065 Query 126245 GCCTTTTTC 126253 || || ||| Sbjct 65066 GCTTTCTTC 65074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597266125032200