Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8634 125 5e-24 seq9253 116 3e-21 seq8726 100 2e-16 seq11021 91.5 1e-13 seq8798 91.5 1e-13 seq2888 87.8 1e-12 seq10212 86.0 4e-12 seq8848 84.2 2e-11 seq8379 84.2 2e-11 seq9990 82.4 5e-11 seq8641 82.4 5e-11 >seq8634 Length=210279 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || | || || |||||||| || || || || || |||||||||||| | Sbjct 12017 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCG 12076 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || |||||||||||||||| || ||| ||||||| ||||| || || ||| Sbjct 12077 AGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGG 12136 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| ||| | || || || ||| ||| || Sbjct 12137 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 12196 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| || || || || || || ||||| || || || ||||| Sbjct 12197 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12243 >seq9253 Length=129212 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || ||||| || |||||||||||| ||| |||| ||||||| Sbjct 94839 ACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTACCGTCTTCC 94780 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| || ||| | ||||| |||||||| || ||| |||||||| ||||| Sbjct 94779 AATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGGATTCCTTCTTTGTCTTGG 94720 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || || || || |||||| |||| || || || || Sbjct 94719 ATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTACCTCTAGTGTTATTGTCTTC 94660 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || || ||||| || Sbjct 94659 CCCGTTAGGGTTTTCACGAAGATCTGCATTTT 94628 >seq8726 Length=217380 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || ||||| ||||||||||| ||| |||| ||||||| Sbjct 142522 ACCAAGTGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCGAGTGTTCTTCCGTCTTCC 142581 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || || ||| | ||||| | ||| || || ||| |||||||||||||| Sbjct 142582 AGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGG 142641 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || || || || ||| || |||||||| || || || Sbjct 142642 ATCTTCGCTTTCACATTGTCGATTGTGTCAGATGATTCAACCTCTAAGGTTATTGTCTTC 142701 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| || || || ||||| ||| Sbjct 142702 CCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 142734 >seq11021 Length=502384 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || || || || |||||||| || ||| | | ||||||| Sbjct 217133 AACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCGTCTTC 217074 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || ||| ||||||| ||||| ||||| ||| |||||||||||||| Sbjct 217073 CAGTTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGTATTCCTTCCTTGTCTTG 217014 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || ||| ||| | || || || || || || || | ||||| || || Sbjct 217013 AATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATAGTCTT 216954 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || || ||||| Sbjct 216953 TCCCGTTAGGGTTTTCACGAAGATCTGCAT 216924 >seq8798 Length=192640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || ||||| || || || || || ||||||||||| | ||| || | || Sbjct 21762 AACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAATCA--GCCAATGTCCGACCATCC 21705 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| ||||| |||||| | || | | ||||||||| ||| || ||||||||||| Sbjct 21704 TCTAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGGATCCCTTCCTTGTCC 21645 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| || || || | || ||||| || | || || |||||||| || || Sbjct 21644 TGAATCTTAGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCAACCTCTAAGGTTATTGTC 21585 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||||| ||| || ||||| ||||||||| Sbjct 21584 TTGCCTGTCAAAGTCTTGACAAATATTTGCATA 21552 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/241 (69%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| |||| | ||| || || ||||| || ||||| || || |||||||| || Sbjct 20867 CCACCTCTTAATCGAAGAACCAAGTGCAGGGTTGATTCTTTCTGAATATTGTAATCAGCC 20808 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | ||||| |||||| | || || | || ||||| || Sbjct 20807 AAGG-TACGGCCATCTTCAAGCTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGAGG 20749 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||| |||||||| || ||| ||||| || ||| | || || ||||| | || | Sbjct 20748 AATGCCTTCCTTATCTTGAATCTTTGCCTTA-ACATTGTCGATGGTATCAGAGCTCTCGA 20690 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 | || | || ||||| || || || || ||||| || ||||||||| || ||||| || Sbjct 20689 CCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGC--ATCTGAAAAAA 20632 Query 15188 A 15188 | Sbjct 20631 A 20631 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||| || ||| || |||||||| || || || || ||||| ||||| Sbjct 21323 CCACCTCTTAATCGTAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAATCAGCC 21264 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | || |||| || || ||||| | || | | ||| ||||| ||| Sbjct 21263 AAAGTCCGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 21204 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || ||| ||| | || || || || | || || Sbjct 21203 ATCCCTTCCTTGTCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACC 21144 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| ||||| || || || || || ||||| || |||||| Sbjct 21143 TCCAAAGTAATAGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCATA 21096 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||||||| || || || || ||||| |||||||| || ||| ||||| | || ||| Sbjct 21533 ACTAAATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGTGTTCTCCCATCCTCT 21474 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | || | | ||| ||||| ||| || ||||||||||| Sbjct 21473 AGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGG 21414 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || ||||| || | || || || || || || ||||| Sbjct 21413 ATCTTGGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTTG 21354 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || |||||||| |||||| Sbjct 21353 CCGGTAAGGGTCTTGACAAAAATCTGCATA 21324 >seq2888 Length=1483 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || ||||| |||||||| ||| |||| | | ||||||| | || Sbjct 147 ATGAAGCGTTGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCTTCCAGCTG 88 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| || ||| ||||||| ||||| ||||| ||| |||||||||||||| Sbjct 87 TTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 37 >seq10212 Length=148016 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || || || |||||||| || |||| | | ||||||| Sbjct 127819 AACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGGCCGTCTTC 127760 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| || ||| | |||||||| || || || ||| || ||||||||||| Sbjct 127759 AAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTG 127700 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || ||| ||| | || || || || || || || | || || ||||| Sbjct 127699 GATCTTAGCTTTCACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGTGTGATTGTTTT 127640 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 ||| || || ||||| || || || ||||| |||| Sbjct 127639 ACCCGTTAGGGTTTTGACGAAGATCTGCATTTTTG 127605 >seq8848 Length=112532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031 ||| || || || || || || |||||||| || ||| ||| | | | ||||| | | Sbjct 94580 ATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCT-AGAGTACGGCCATCTTCGAGCT 94522 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 |||| || ||| ||||||| ||||| ||||| ||| || ||||||||||| || | Sbjct 94521 GTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCT 94462 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | ||| ||| | || || || || || || || | ||| ||||| ||||| | Sbjct 94461 TCGCTTTGACATTGTCGATGGTGTCAGATGACTCAACCTCAAGGGTGATGGTCTTACCCG 94402 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || ||||| || || || ||||| |||| Sbjct 94401 TTAGGGTTTTCACGAAGATCTGCATCTTTG 94372 >seq8379 Length=157374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031 ||| || || || || || || |||||||| || ||| ||| | | | ||||| | | Sbjct 116286 ATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCT-AGAGTACGGCCATCTTCGAGCT 116228 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 |||| || ||| ||||||| ||||| ||||| ||| || ||||||||||| || | Sbjct 116227 GTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCT 116168 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | ||| ||| | || || || || || || || | ||| ||||| ||||| | Sbjct 116167 TCGCTTTGACATTGTCGATGGTGTCAGATGACTCAACCTCAAGGGTGATGGTCTTACCCG 116108 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || ||||| || || || ||||| |||| Sbjct 116107 TTAGGGTTTTCACGAAGATCTGCATCTTTG 116078 >seq9990 Length=160576 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || |||||||| || || ||||| || ||||| || | | | || ||||| Sbjct 159439 AAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCCAAAGTCCTGCCGTCT 159498 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || || ||| | ||||| | ||| ||||| ||| || || ||||| || Sbjct 159499 TCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT 159558 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || || | || || || || | ||||| || || || ||||| Sbjct 159559 TGGATTTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCTACCTCCAAAGTGATGGTC 159618 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||||| || |||||||||||| Sbjct 159619 TTTCCAGTCAAGGTTTTAACGAAAATTTGCATA 159651 >seq8641 Length=178042 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || |||||||| || || ||||| || ||||| || | | | || ||||| Sbjct 1138 AAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCCAAAGTCCTGCCGTCT 1079 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| || || ||| | ||||| | ||| ||||| ||| || || ||||| || Sbjct 1078 TCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT 1019 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || || | || || || || | ||||| || || || ||||| Sbjct 1018 TGGATTTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCTACCTCCAAAGTGATGGTC 959 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||||| || |||||||||||| Sbjct 958 TTTCCAGTCAAGGTTTTAACGAAAATTTGCATA 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357340972798775