Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq11021 127 2e-24 seq8634 123 2e-23 seq9253 116 3e-21 seq8798 116 3e-21 seq9990 104 2e-17 seq8848 104 2e-17 seq8641 104 2e-17 seq8379 104 2e-17 seq10212 98.7 9e-16 seq2888 96.9 3e-15 seq8726 91.5 1e-13 >seq11021 Length=502384 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || ||||| ||||| |||||||| ||||| || || || Sbjct 217150 CCACCACGGAGACGGAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGCC 217091 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| |||||| || ||| |||||||||| ||||||||||| || Sbjct 217090 AGAGTACGGCCGTCTTCCAGTTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGT 217031 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || |||||||| || ||||| || | |||||| || ||||| || Sbjct 217030 ATTCCTTCCTTGTCTTGAATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCAACC 216971 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||||| || || || ||||| ||||| || || || |||||| Sbjct 216970 TCGAGAGTAATAGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCATC 216923 >seq8634 Length=210279 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| |||||||||||||| ||||| || |||||| || || | || || Sbjct 12034 CACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCGAGAGTCCTTCCGTCTTC 12093 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||||||||| ||| |||||||||| ||||| ||||| || || ||||| || ||||| Sbjct 12094 TAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTG 12153 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||| | || | |||||||| || || || || || || | ||| || Sbjct 12154 GATCTTCGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATCGTCTT 12213 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || || || |||||| Sbjct 12214 CCCCGTTAGGGTTTTCACGAAGATCTGCATC 12244 >seq9253 Length=129212 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| ||||||||||| || ||||| || |||||| || ||| || || |||||||| Sbjct 94834 ATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTACCGTCTTCCAATTG 94775 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| ||| | |||||||| || || ||||| || || |||||||| ||||| || || Sbjct 94774 TTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGGATTCCTTCTTTGTCTTGGATCTT 94715 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | ||||| || || || || || || || | || || || || Sbjct 94714 CGCTTTCACATTGTCGATTGTGTCTGATGATTCTACCTCTAGTGTTATTGTCTTCCCCGT 94655 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || || ||||| Sbjct 94654 TAGGGTTTTCACGAAGATCTGCAT 94631 >seq8798 Length=192640 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| |||||||| || || ||||| ||||| | ||| ||| || | ||| Sbjct 20843 TGCAGGGTTGATTCTTTCTGAATATTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGT 20784 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || |||| ||||||||| || ||||||||||| ||||||||||| ||| Sbjct 20783 TTACCAGCGAAGATTAATCTTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGAATCTTT 20724 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||| || || |||||| |||||||| | || ||||| || Sbjct 20723 GCCTTAACATTGTCGATGGTATCAGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCAGTG 20664 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || |||||||||||| Sbjct 20663 AGTGTTTTCACGAAAATTTGCATC 20640 >seq9990 Length=160576 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || | || || ||||| ||||| || ||||| |||||| Sbjct 159193 ATACCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCG 159252 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || || | ||||||| ||||||||||| Sbjct 159253 GCCAAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGT 159312 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || ||||| ||||| ||||| || | || | || | ||||||||| ||| Sbjct 159313 GGAATACCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTC 159371 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || || || || | ||| || || || |||||||| Sbjct 159372 CACCTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 159422 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || | || || ||||| |||||||| ||||| || || Sbjct 159421 ATACCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCA 159480 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | ||| ||||| ||| | ||||| | ||||||||||| Sbjct 159481 GCCAAAGTCCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGT 159540 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || |||||||| | |||| | | | || | || | |||||| || ||| Sbjct 159541 GGGATACCCTCCTTATCTTGGA-TTTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTC 159599 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || || || | ||||| || ||||||||||| Sbjct 159600 TACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 159650 >seq8848 Length=112532 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | || ||||| || || |||||||| ||||| || || || ||| Sbjct 94603 CCACCACGGAGACGGAGGACGAGATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCT 94544 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || ||| || | ||||| || ||| |||||||||| ||||||||||| || Sbjct 94543 -AGAGTACGGCCATCTTCGAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGG 94485 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || ||||| || || ||||| || | |||||| || ||||| || Sbjct 94484 GATACCTTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGATGACTCAAC 94425 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| || || || |||||| Sbjct 94424 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 94376 >seq8641 Length=178042 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || | || || ||||| ||||| || ||||| |||||| Sbjct 1384 ATACCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCG 1325 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || || | ||||||| ||||||||||| Sbjct 1324 GCCAAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGT 1265 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || ||||| ||||| ||||| || | || | || | ||||||||| ||| Sbjct 1264 GGAATACCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTC 1206 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || || || || | ||| || || || |||||||| Sbjct 1205 CACCTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 1155 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || | || || ||||| |||||||| ||||| || || Sbjct 1156 ATACCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCA 1097 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | ||| ||||| ||| | ||||| | ||||||||||| Sbjct 1096 GCCAAAGTCCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGT 1037 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || |||||||| | |||| | | | || | || | |||||| || ||| Sbjct 1036 GGGATACCCTCCTTATCTTGGA-TTTTCGCCTTAACGTTGTCGATGGTGTCAGAGCTCTC 978 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || || || | ||||| || ||||||||||| Sbjct 977 TACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 927 >seq8379 Length=157374 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | || ||||| || || |||||||| ||||| || || || ||| Sbjct 116309 CCACCACGGAGACGGAGGACGAGATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCT 116250 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || ||| || | ||||| || ||| |||||||||| ||||||||||| || Sbjct 116249 -AGAGTACGGCCATCTTCGAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGG 116191 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || ||||| || || ||||| || | |||||| || ||||| || Sbjct 116190 GATACCTTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGATGACTCAAC 116131 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| || || || |||||| Sbjct 116130 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 116082 >seq10212 Length=148016 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || | ||| |||||||||||||| ||||| || || || | Sbjct 127836 CCACCACGGAGACGGAGAACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCG 127777 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | ||||| || ||| | ||||| |||||||| ||||| || Sbjct 127776 AGAGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTGGG 127717 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| || || ||| | || | |||||| || ||||| || Sbjct 127716 ATGCCTTCCTTGTCTTGGATCTTAGCTTTCACATTGTCGATGGTGTCAGAGGACTCAACC 127657 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| || ||||| ||||| || || || ||||| Sbjct 127656 TCAAGTGTGATTGTTTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 127610 >seq2888 Length=1483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||| |||||||||||||||||||| || || ||| | Sbjct 170 CCACCACGGAGACGGAGCACCAGATGAAGCGTTGATTCCTTTTGGATGTTGTAGTCGGCG 111 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| ||||| || ||| |||||||||| ||||||||||| || Sbjct 110 AGAGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGG 51 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGA 45264 || ||||| || ||||| || || ||||| Sbjct 50 ATTCCTTCCTTGTCTTGGATCTTCGCTTTGA 20 >seq8726 Length=217380 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| |||||||||||||| || ||||| || ||| | || |||| ||| Sbjct 142528 TGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCGAGTGTTCTTCCGTCTTCCAGTTGC 142587 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||||| ||||| ||||| || || ||||| || ||||| || || Sbjct 142588 TTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTC 142647 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||| || || || || || | || | || || || ||| Sbjct 142648 GCTTTCACATTGTCGATTGTGTCAGATGATTCAACCTCTAAGGTTATTGTCTTCCCCGTT 142707 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || ||||| Sbjct 142708 AGGGTTTTCACGAAGATCTGCAT 142730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451937009781400