Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq9882 131 2e-25 seq10724 100 4e-16 seq8473 96.9 4e-15 seq8685 93.3 5e-14 seq8998 89.7 6e-13 >seq9882 Length=79551 Score = 131 bits (144), Expect = 2e-25 Identities = 182/254 (72%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 7803 CAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAAC 7862 |||| || || |||||||| || | |||||| || | || |||||||||||| | |||| Sbjct 45988 CAAAATAACCATGAGCAGCTACAAAGTTGTATGTTTATTTTTCTTGACCGAATATGTAAC 46047 Query 7863 CATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAAC 7922 | | || || ||| || |||||||| | | || | ||| ||||||| ||| Sbjct 46048 CTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACAAAAAAAC 46107 Query 7923 CATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGG 7982 |||||| |||| || || || || | || |||||||| || || | |||||| || | Sbjct 46108 TATGCAT-ACACTAAATAGGGAGCCGCTGAATACACCAGCTACACCTAACATGTGAAATG 46166 Query 7983 GGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGA 8042 |||| || || | ||||||||| || ||||| |||| ||| || |||| ||||| ||| Sbjct 46167 GGTGTATAAGAAAGTTGTGCTCAGCCTGGAATACAATCATAAAGCTGAAAATACCAAAGA 46226 Query 8043 TGCCAAGAGGCATA 8056 | | | || |||| Sbjct 46227 TTCTTATAGACATA 46240 >seq10724 Length=33194 Score = 100 bits (110), Expect = 4e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 10210 AGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGTC 10269 || ||||| |||| || | | | || ||| ||| || ||||||| |||| || Sbjct 30955 AGATCATCTTCTTGGTGAGTTTTAATAACAACATCAGAAGTAGGATAAGCTGCACAAGTG 30896 Query 10270 AGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTACC 10329 |||| || || || | ||||| ||||||||||| || ||| || |||||| || Sbjct 30895 AGAACAAATCCTTCACCAATCTGATCATCATCAAGAAAACTTTGGTCTGATTGATCAACA 30836 Query 10330 GTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTTG 10389 | ||| || | | ||| || |||||||| || || | |||||| || || ||||| Sbjct 30835 GAACCAGACACAACTTTACCAGCACAACTTGAGCAAGAACCAGCACGACATGAGTAAGGT 30776 Query 10390 AGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCACACTCAA 10447 | ||||| || ||||||||||| ||||| |||| || ||| || |||| |||| Sbjct 30775 AAATCAATTCCAGCTTCTTCAGCTGCATCAAGAACATAAACATCTTCTTCACATTCAA 30718 >seq8473 Length=72639 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| | |||| || |||| | || || | || || |||||||||||||| Sbjct 6259 GTAGGATAAGCAGCACAAGTGAGAACATATCCTTCACCCATTTGTTCATCATCAAGGAAA 6318 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 ||| || |||||| || | ||| || | | ||| || |||||||| || || | | Sbjct 6319 CTTTGGTCAGATTGATCAACAGAACCAGACACAACTTTACCAGCACAACTTGAGCAAGAA 6378 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAG 10421 ||||| ||||| ||||| | ||||| || ||||||||||| ||||| || Sbjct 6379 CCAGCACGGCATGAGTAAGGCAAATCAATTCCAGCTTCTTCAGCTGCATCAAG 6431 >seq8685 Length=252540 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 10210 AGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGTC 10269 |||||| || |||| | | | || |||||||| | ||||||| ||||| ||| Sbjct 168985 AGTTCAGTTTCCTTGTGAGTTTGAATAACACAATCAGACTGTGGATAAGCCACACAAGTC 168926 Query 10270 AGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTACC 10329 | || ||||| || | || |||||||||| ||||| ||| ||||| || Sbjct 168925 AAAACATAACCATTCTCAAAGTGACCATCATCAAGAAACGAACCATCCGACTGATCAACT 168866 Query 10330 GTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTTG 10389 |||||| | | || || ||||| | ||||| |||||||||| || || || Sbjct 168865 TCACCCGATACAATCTTACCAGCACATGTAGAACACGCACCAGCTCTACAAGAATAAGGT 168806 Query 10390 AGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCACACTCAAA 10448 | |||| |||||||||||||| ||||||| || |||||||| || | | |||||| Sbjct 168805 AACTCAACTCCTGCTTCTTCAGCTGCATCCAATATATACTGATCATCTGGAACCTCAAA 168747 >seq8998 Length=67453 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 10236 CACACAATCGCTCGTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTC 10295 ||||||||| | | || |||| ||||| |||| | ||||| || | || | Sbjct 36914 CACACAATCAGACTTTGGGTAAGCCACACAAGTCAACACATAACCATTGTCCAAATGATT 36855 Query 10296 ATCATCAAGGAACGATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACA 10355 ||||||||| ||||| ||| ||| || || ||| | | | || || ||||| Sbjct 36854 ATCATCAAGAAACGAACCATCAGATTGGTCAACATCACCTGTCACAATCTTACCAGCACA 36795 Query 10356 ACTCGAACAGGCACCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGC 10415 | | ||||| |||||||||| ||| ||||| | ||||| |||||||||||||| || Sbjct 36794 AGTTGAACAAGCACCAGCTCTGCAAGAGTAAGGTAAGTCAACTCCTGCTTCTTCAGCTGC 36735 Query 10416 ATCCAGAATGTACTGATCGTCAGCACACTCAAAAGTAGTTT 10456 ||||| ||||| || || || | |||| ||| | |||| Sbjct 36734 ATCCAATATGTATTGGTCATCTG-TCACTTCAAATTCGTTT 36695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622033697599600