Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9146 105 8e-18 seq11595 82.4 9e-11 >seq9146 Length=70564 Score = 105 bits (116), Expect = 8e-18 Identities = 137/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| |||||||| ||||| | ||| ||||||||||| || ||| Sbjct 54258 CCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGGCATGAGACCTCGTTTC 54317 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | |||||| || ||||||||||| || || ||||| ||||| Sbjct 54318 TTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 54377 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | || || ||||| | | || | ||| | ||| |||||||||| ||| Sbjct 54378 GCTACGATTCGTTCAGCAAAAGTTTGAGA---TCCATCGATCCAAGTCATCGCCCATTGT 54434 Query 127718 GCCTTTTTC 127726 || || ||| Sbjct 54435 GCTTTCTTC 54443 >seq11595 Length=173172 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | || || ||||| | || |||||||| || || ||| Sbjct 64889 CCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTC 64948 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | ||||| || ||||||||||| || || ||||| ||||| Sbjct 64949 TTTAGCCAGAAGATAGAGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 65008 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | || || || |||| | || | ||| | |||| ||||||||||||| Sbjct 65009 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCATCGATCCACGTCATCGCCCACTGA 65065 Query 127718 GCCTTTTTC 127726 || || ||| Sbjct 65066 GCTTTCTTC 65074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613417359539400