Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq8848 118 1e-21 seq8379 118 1e-21 seq10330 104 3e-17 seq9990 104 3e-17 seq8641 104 3e-17 seq8726 100 3e-16 seq2888 100 3e-16 seq8634 98.7 1e-15 seq11021 93.3 5e-14 seq8798 93.3 5e-14 >seq8848 Length=112532 Score = 118 bits (130), Expect = 1e-21 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | |||||| || | || |||||||| || ||||||||| Sbjct 94567 TCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCTTCGAGCTGTTTCCCGGCGAAT 94508 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| ||||||| |||| | Sbjct 94507 ATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCTTCGCTTTGACATTG 94448 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | |||||||| || ||||| || ||||| || Sbjct 94447 TCGATGGTGTCAGATGACTCAACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACG 94388 Query 46583 AAGATTTGCAT-TTTGC-------ACAAACAACA 46608 ||||| ||||| ||||| |||||||||| Sbjct 94387 AAGATCTGCATCTTTGCGGCAAAAACAAACAACA 94354 >seq8379 Length=157374 Score = 118 bits (130), Expect = 1e-21 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | |||||| || | || |||||||| || ||||||||| Sbjct 116273 TCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCTTCGAGCTGTTTCCCGGCGAAT 116214 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| ||||||| |||| | Sbjct 116213 ATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCTTCGCTTTGACATTG 116154 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | |||||||| || ||||| || ||||| || Sbjct 116153 TCGATGGTGTCAGATGACTCAACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACG 116094 Query 46583 AAGATTTGCAT-TTTGC-------ACAAACAACA 46608 ||||| ||||| ||||| |||||||||| Sbjct 116093 AAGATCTGCATCTTTGCGGCAAAAACAAACAACA 116060 >seq10330 Length=49715 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| | || ||||| | || || |||||||| || ||||| Sbjct 15267 CTCCTTTTGAATGTTGTAGTCAGCAAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 15326 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||| |||||| ||||| ||| Sbjct 15327 GATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 15385 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || |||| |||||||| ||||| ||||| || | Sbjct 15386 TGTCAATGGTGTCAGAGCTC---TCTACCTCCAATGTGATGGTCTTGCCGGTCAGTGTCT 15442 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||| ||||| Sbjct 15443 TCACAAAGATCTGCAT 15458 >seq9990 Length=160576 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| || | || ||||||||| ||||||||||| | Sbjct 159424 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCC 159483 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| || || ||||| |||||||| ||||| | ||||||||| | || Sbjct 159484 AAAGTCCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 159543 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | |||||| || ||| ||| ||| | ||| | | | ||||| |||| || Sbjct 159544 ATACCCTCCTTATCTTGGATTTTCGCCTT-AACGTTGTCGATGGTGTCAGAGCTC---TC 159599 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || |||| |||||||| || |||||||| Sbjct 159600 TACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 159650 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| | | |||||| | || || |||||||| || ||||| Sbjct 158547 CTCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAA 158606 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||| |||||| |||||| ||| | | Sbjct 158607 GATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATT 158666 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| |||| ||||| |||| |||||||| || || ||||| || || Sbjct 158667 GTCAATCGTGTCAGAGCTC---TCCACCTCCAGTGTGATGGTCTTCCCGGTCAGTGTCTT 158723 Query 46579 AACAAAGATTTGCAT 46593 ||||| || ||||| Sbjct 158724 CACAAAAATCTGCAT 158738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| || | || |||||| || |||||||| |||| Sbjct 159196 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 159255 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 159256 AAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGA 159315 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||| ||||| ||| || ||| | ||| | | | ||||| |||| || Sbjct 159316 ATACCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTC---TC 159371 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | ||| ||||| || || |||| || || || ||||||||||| Sbjct 159372 CACCTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 159422 >seq8641 Length=178042 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| || | || ||||||||| ||||||||||| | Sbjct 1153 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTTTGAATATTGTAGTCAGCC 1094 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| || || ||||| |||||||| ||||| | ||||||||| | || Sbjct 1093 AAAGTCCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 1034 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | |||||| || ||| ||| ||| | ||| | | | ||||| |||| || Sbjct 1033 ATACCCTCCTTATCTTGGATTTTCGCCTT-AACGTTGTCGATGGTGTCAGAGCTC---TC 978 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || |||| |||||||| || |||||||| Sbjct 977 TACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTTTTAACGAAAATTTGCAT 927 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| | | |||||| | || || |||||||| || ||||| Sbjct 2030 CTCCTTCTGTATGTTGTAGTCAGCCAAAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAA 1971 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||| |||||| |||||| ||| | | Sbjct 1970 GATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGGATCTTGGCCTTCACATT 1911 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| |||| ||||| |||| |||||||| || || ||||| || || Sbjct 1910 GTCAATCGTGTCAGAGCTC---TCCACCTCCAGTGTGATGGTCTTCCCGGTCAGTGTCTT 1854 Query 46579 AACAAAGATTTGCAT 46593 ||||| || ||||| Sbjct 1853 CACAAAAATCTGCAT 1839 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| || | || |||||| || |||||||| |||| Sbjct 1381 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 1322 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 1321 AAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGA 1262 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||| ||||| ||| || ||| | ||| | | | ||||| |||| || Sbjct 1261 ATACCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTC---TC 1206 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | ||| ||||| || || |||| || || || ||||||||||| Sbjct 1205 CACCTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 1155 >seq8726 Length=217380 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||||||||| | ||||| || | || ||||||||||| ||||| || | Sbjct 142504 CCTCCTCTTAAACGGAGCACCAAGTGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCG 142563 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || || ||||| |||||||| ||||| | |||||| || | || Sbjct 142564 AGTGTTCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 142623 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||||| || | | | | ||||| ||||| || Sbjct 142624 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCAGATGATTCAACC 142683 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || || || || ||||| || ||||| || ||||| |||||||| Sbjct 142684 TCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 142733 >seq2888 Length=1483 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||||||| | || ||||||||||| |||||||||| ||||| || | Sbjct 159 ACGGAGCACCAGATGAAGCGTTGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGGCC 100 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||| || |||||||||||||| ||||||||||| | || | | ||||| Sbjct 99 GTCTTCCAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTT 40 Query 46498 GTCCATGATCTTC 46510 ||| ||||||| Sbjct 39 GTCTTGGATCTTC 27 >seq8634 Length=210279 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| ||| | || ||||| ||||| ||||| |||| Sbjct 12017 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCG 12076 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || | || || |||||||||||||| |||||||| || | || Sbjct 12077 AGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGG 12136 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||||| || | | | | |||||| ||||| || Sbjct 12137 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 12196 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || || || ||||| || ||||| || ||||| ||||| Sbjct 12197 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12243 >seq11021 Length=502384 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | ||||| || |||| || || || || ||||||||| Sbjct 217114 TCCTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCGTCTTCCAGTTGTTTCCCGGCGAAT 217055 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| |||||| |||| | Sbjct 217054 ATCAATCGCTGCTGGTCCGGTGGTATTCCTTCCTTGTCTTGAATCTTCGCTTTGACATTG 216995 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | || || || || ||||| || ||||| || Sbjct 216994 TCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATAGTCTTTCCCGTTAGGGTTTTCACG 216935 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 216934 AAGATCTGCAT 216924 >seq8798 Length=192640 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | || ||| || ||||| |||||||| | || || | | Sbjct 21084 ACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTTCTTCC 21025 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| || | | |||||| |||| || | | ||||| Sbjct 21024 ATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGATCGGGAGGGATACCTTCCTT 20965 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTC---GCTCGATTCCACATCCACCG 46553 |||| ||| || ||||| ||| | || ||||| |||| || || |||| | Sbjct 20964 GTCCTGGATTTTAGCCTTGA-CGTTGTCAATAGTGTCAGAGCTC---TCAACTTCCAAAG 20909 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||||||| || || || || |||||||| ||||| Sbjct 20908 TGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 20869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565155627901800