Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq10330 111 1e-19 seq9253 102 6e-17 seq10212 93.3 3e-14 seq8634 93.3 3e-14 seq11021 84.2 2e-11 seq9990 84.2 2e-11 seq8726 84.2 2e-11 seq8641 84.2 2e-11 >seq10330 Length=49715 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||||||| | ||| |||||| || ||||||||||| |||||| || | || Sbjct 15931 AGAACCAAATGAAGAGTTGATTCTTTCTGGATATTATAATCAGCCAAAGTACGGCCGTCC 15990 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || || ||||| || |||| || | | ||||||||| | || | |||||||||||| Sbjct 15991 TCTAACTGTTTTCCAGCAAAGATAAGTCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 16050 Query 39628 CATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 || || |||| | |||| || ||||| | ||||||||| || | || || | Sbjct 16051 TGGATCTTAGCCTTAACGTTGTCGATA--GTGTCAGAGCTTTCCACCTCAAGGGTGATGG 16108 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || | |||||| |||||||||||||| Sbjct 16109 TCTTTCCGGTAAGAGTTTTAACGAAGATCTGCAT 16142 >seq9253 Length=129212 Score = 102 bits (112), Expect = 6e-17 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| ||||||||||| | || |||||| || || || |||||||| Sbjct 94857 CCTCCTCTTAGACGGAGTACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCGGCG 94798 Query 39553 AAAACGCGTTCA----TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| || ||||||||||| ||| | || || || ||||| ||||||| Sbjct 94797 A----GTGTTCTACCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGG 94742 Query 39609 GGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT 39666 || | ||||||||||| | || || | | || |||| | |||||||| | Sbjct 94741 TGGGATTCCTTCTTTGTCTTGGATCTTCGCTTTCACATTGTCG--ATTGTGTCTGATGAT 94684 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | || ||||| || ||||||| ||||| |||||||||||||| Sbjct 94683 TCTACCTCTAGTGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 94631 >seq10212 Length=148016 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | || ||| || || || || || || || Sbjct 127836 CCACCACGGAGACGGAGAACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCG 127777 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || | || || | ||||||||| | ||||| ||||| |||||||||| || Sbjct 127776 AGAGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTGGG 127717 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || || ||| | | |||| | ||||| | | || | Sbjct 127716 ATGCCTTCCTTGTCTTGGATCTTAGCTTTCACATTGTCGATG--GTGTCAGAGGACTCAA 127659 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || |||||||||||||||| ||||| |||||||||||||| Sbjct 127658 CCTCAAGTGTGATTGTTTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 127610 >seq8634 Length=210279 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || |||||||| | || ||| || || || || |||||||| Sbjct 12017 CCTCCTCTCAGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCG 12076 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | | || || |||||||| ||| | || || || ||||||||||||| || Sbjct 12077 AGAGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGG 12136 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | || || | | || |||| | |||||| | ||| | Sbjct 12137 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCG--ATTGTGTCGGATGATTCAA 12194 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTC 39722 | || | || || || || ||||||| ||||| |||||||||||||| || Sbjct 12195 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTC 12246 >seq11021 Length=502384 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || || || || || |||| | || | || |||| |||||||||| | || Sbjct 217115 TTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCGTCTTCCAGTTGTTTCCCGGCGAA 217056 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TC 39645 || || |||||||| |||| |||| ||||| ||||| || || ||| | | Sbjct 217055 TATCAATCGCTGCTGGTCCGGTGGTATTCCTTCCTTGTCTTGAATCTTCGCTTTGACATT 216996 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 |||| | ||||| | | || || || | |||||| || || ||||||| ||||| Sbjct 216995 GTCGATG--GTGTCAGAGGACTCAACCTCGAGAGTAATAGTCTTTCCCGTTAGGGTTTTC 216938 Query 39706 ACGAAGATCTGCATGTC 39722 |||||||||||||| || Sbjct 216937 ACGAAGATCTGCATCTC 216921 >seq9990 Length=160576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || || || || ||||| ||||||||| Sbjct 159196 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 159255 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | || || ||| |||| || || | |||||| |||| || Sbjct 159256 AAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGA 159315 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| || | ||| | | | ||||| | ||| ||||| Sbjct 159316 ATACCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCCAC 159374 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || ||||| || ||||| || |||||||| ||||| Sbjct 159375 CTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 159422 >seq8726 Length=217380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || ||||| || | || ||| ||||| || || ||||| || Sbjct 142504 CCTCCTCTTAAACGGAGCACCAAGTGAAGCGTCGATTCCTTTTGGATGTTGTAATCCGCG 142563 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || |||| ||| || ||| | || || || | ||||||||||| || Sbjct 142564 AGTGTTCTTCCGTCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 142623 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | || || | | || |||| | |||||| | ||| | Sbjct 142624 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCG--ATTGTGTCAGATGATTCAA 142681 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || ||||| || ||||||| ||||| |||||||||||||| Sbjct 142682 CCTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 142730 >seq8641 Length=178042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || || || || ||||| ||||||||| Sbjct 1381 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 1322 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | || || ||| |||| || || | |||||| |||| || Sbjct 1321 AAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGA 1262 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| || | ||| | | | ||||| | ||| ||||| Sbjct 1261 ATACCCTCTTTGTCTTGGATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCCAC 1203 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || ||||| || ||||| || |||||||| ||||| Sbjct 1202 CTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 1155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347320003762595