Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11595 154 2e-32 seq9146 145 9e-30 seq5306 127 3e-24 seq9133 123 3e-23 seq11467 118 1e-21 seq8589 118 1e-21 seq9060 105 8e-18 >seq11595 Length=173172 Score = 154 bits (170), Expect = 2e-32 Identities = 375/560 (67%), Gaps = 11/560 (2%) Strand=Plus/Minus Query 101758 TGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT- 101816 ||||||| | | || ||||| ||||||| | |||||||| || | || | | Sbjct 65441 TGTTCCCAATTCACTACCCACAGATCTGGGAGATGTATAAGAAAGC-CGAAGCATCGTTC 65383 Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACG--ATTGGAAGACTCTAAATG 101874 |||||||||||||| |||||||| ||| | || ||||| ||||| ||| |||||| | Sbjct 65382 TGGACTGCTGAAGAAGTAGATCTATCACAAGAC--GGACGCGATTGGGAGAATCTAAACG 65325 Query 101875 AAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTG 101934 | ||| | || || ||| || |||| || ||||| |||| || |||||||| | Sbjct 65324 ACGGCGAACGTCACTTTATCAAACACGTCCTCGCTTTCTTCGCTGCTTCAGATGGAATCG 65265 Query 101935 TTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCT 101993 |||| |||||| || | | | | | | || || ||| ||| || ||| | || Sbjct 65264 TTTTAGAGAATCTCGCTTCTCGATTCATGTCA-GATGTACAAGTCTCGGAGGCGCGTGCT 65206 Query 101994 TTCTATGCGTATCAATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATA 102053 || || | | ||| | ||| | | ||| |||| || ||| || | Sbjct 65205 TTTTACGGATTCCAAATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTC 65146 Query 102054 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 102113 || | ||||| || ||| |||| | || |||||| || || |||| || Sbjct 65145 GATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCTATTGAAACTATT 65086 Query 102114 CCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 102173 || || || |||||||| | ||||| |||| |||| | ||| | || | || Sbjct 65085 CCTTGCGTTGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGATGGA---TCTCAAACC 65029 Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || ||||| ||| || | || || || |||||||| |||||||||||||| ||| ||| Sbjct 65028 TTCGCTGAACGAATCGTAGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTT 64969 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||| |||| | ||||| ||||| ||||| |||||||| || | ||||| |||||| Sbjct 64968 TGCTCTATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGATTAACTTTCTCAAACGAG 64909 Query 102294 CTTATCTCTCGTGACGAGGG 102313 | |||||||| ||||| || Sbjct 64908 TTAATCTCTCGAGACGAAGG 64889 >seq9146 Length=70564 Score = 145 bits (160), Expect = 9e-30 Identities = 395/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Minus Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 101780 || || || ||| | || |||| ||||||| | |||| || | | |||||||| Sbjct 54847 GAGCCACTTCTAACTCCGACACCGGACAGATTCTGTATGTTTCCGATTCATTATCCACAG 54788 Query 101781 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 101839 ||||||| | || ||||| || | || | | | ||||| || ||||| |||||||| Sbjct 54787 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCATTCTGGACCGCCGAAGAAGTAGATCT 54729 Query 101840 CTCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAA 101897 ||| | || ||||| ||||| ||| |||||| || |||| | ||||| ||| Sbjct 54728 ATCACATGAC--GGACGTGATTGGGAGAATCTAAACGACGGTGAACGTCACTTCATCAAA 54671 Query 101898 TACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAA-CAA 101956 || | || || || || |||| || |||||||| ||||| |||||| | | | | Sbjct 54670 CACGTTCTCGCTTTTTTCGCTGCATCAGATGGAATCGTTTTAGAGAATCTTGCTTCTCGA 54611 Query 101957 CTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAA 102016 | | | || || ||| ||| || ||| | |||| || | | |||| | Sbjct 54610 TTCATGTCA-GATGTTCAAGTCTCGGAGGCGCGTGCTTTTTACGGATTTCAAATCGCGAT 54552 Query 102017 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 102076 ||| | | ||| |||| || ||| || | || | ||||| || ||| | Sbjct 54551 TGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGATACATATATCAAAGATAATAA 54492 Query 102077 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 |||| | || |||||| || || |||| | || || || |||||||| | Sbjct 54491 AGAGAGAGATCATCTCTTTCGCGCAATTGAAACTATCCCTTGCGTTACGAAGAAAGCACA 54432 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 102196 ||||| |||| ||| | ||| | || | | |||||||| ||| || | || || Sbjct 54431 ATGGGCGATGACTTGGATCGATGGA---TCTCAAACTTTTGCTGAACGAATCGTAGCTTT 54375 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 || |||||||| |||||||||||||| ||| ||| || | || | ||||| ||||| Sbjct 54374 CGCTTGTGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTTCAATCTTCTGGCTAAAGAA 54315 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||||||| ||| | ||||| || || || |||||||| ||||| || Sbjct 54314 ACGAGGTCTCATGCCTGGTTTAACTTTCTCAAATGAACTAATCTCTCGAGACGAAGG 54258 >seq5306 Length=3186 Score = 127 bits (140), Expect = 3e-24 Identities = 286/419 (68%), Gaps = 18/419 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | || ||||| || | || | || ||| |||| | || ||| Sbjct 818 TCAAGAATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACACCAGTGTTACCTT--CAA 761 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 ||||||||||||| || | ||||| || | || ||||| | ||||||||| || Sbjct 760 AACCATCCATCTCAGTTAGGAGCTGATTGAGTGTCTGTTCTCTTTCATCATTACCTCC-- 703 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || |||||||| ||||||| || || |||| Sbjct 702 -ACCAATTCCGGTTCCTCTTTGCCTACCAACCGCATCAATTTCATCAACAAACACAATGC 644 Query 16093 ATGGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149 | || || || || ||| ||| ||||| || || | ||| || || |||| Sbjct 643 AAGGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCGCGGACTC--TTGAAGCACCAACAC 587 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 16208 | ||||||||||| ||||| | | | || || | || ||| || ||| || |||| Sbjct 586 CGACAAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCA 528 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || ||||||||| || | |||||| ||||| ||||| || ||| ||||| || Sbjct 527 CCAGCAATGGCTTTTGCCAAAAGAGTTTTACCAGTACCAGGAGGACCAATAAGGAGAACA 468 Query 16269 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||||||||||| ||| || | |||||||||||| ||| ||||| || || Sbjct 467 CCTTTCGGAATCTTGGCACCAACAGCAGTGAATCTCTCAGGTTTCTTCAGAAACTCAAC 409 >seq9133 Length=41873 Score = 123 bits (136), Expect = 3e-23 Identities = 201/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| ||||| |||||||| | |||||||| | Sbjct 23983 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCTCTCTCATCATTACC--A 23926 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | |||| | ||||| ||||||||||||||||| || || || Sbjct 23925 CCTCCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATA 23866 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || || ||||| | ||||| || || || | || || || Sbjct 23865 CAAGG--AGCTTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAAC 23810 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||| ||||| | | || | |||| | ||| || ||| || ||| Sbjct 23809 ACCAACAAAAAGCTCAACAAACTCCGAAGCAGCACATGAAAAGAACGGTACACCAGCTTC 23750 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || |||| |||| || | ||| ||||| || ||||| || Sbjct 23749 GCCAGCAACAGCTCTAGCTAAAAGCGTCTTCCCTGTACCCGG 23708 >seq11467 Length=72189 Score = 118 bits (130), Expect = 1e-21 Identities = 256/374 (68%), Gaps = 18/374 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| | ||| || | ||| | || |||||| | ||| | ||||||||| Sbjct 11764 CGATCAAATCTACCAGGTCTAAGCAATGCAGAATCAAGAACATCTGGTCTATTCGTTGCA 11705 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCA---AAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| || ||| | | || || || ||||||||||| ||||| ||||| Sbjct 11704 GCCAACACAATAACACCAGAAT---TACCAGAGAACCCATCCATCTCCGTCAATAGCTGA 11648 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 16059 ||||| ||||| || | ||||||||| | | | ||| ||||| | | ||| ||| Sbjct 11647 TTAATCGTTTGCTCTCTTTCATCATTTCC--ACCTCCCATTCCAGCTCCTCTTTGTCTTC 11590 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 16117 |||| ||||||||||||||||| || || || || || ||||| || | || Sbjct 11589 CCACAGCATCAATCTCATCAATAAACACAATACAAGG--AGCTTTCGACTTCGCTTTCTC 11532 Query 16118 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 ||| | ||||| || || || | || || || |||||||| | ||| ||||| | | Sbjct 11531 AAACAAATCCC-TA-ACCCTAGAAGCACCAACTCCAACAAAAAGCTCAACAAACTCAGAA 11474 Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 || | |||| | ||| || || | |||||| |||| |||| || | |||||| Sbjct 11473 GCAGCACATGAAAAGAACGGTACTCCGGCTTCACCAGCAACAGCTCTAGCTAATAGAGTC 11414 Query 16236 TTACCCGTACCTGG 16249 || || |||||||| Sbjct 11413 TTTCCTGTACCTGG 11400 >seq8589 Length=45551 Score = 118 bits (130), Expect = 1e-21 Identities = 256/374 (68%), Gaps = 18/374 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| | ||| || | ||| | || |||||| | ||| | ||||||||| Sbjct 11764 CGATCAAATCTACCAGGTCTAAGCAATGCAGAATCAAGAACATCTGGTCTATTCGTTGCA 11705 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCA---AAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| || ||| | | || || || ||||||||||| ||||| ||||| Sbjct 11704 GCCAACACAATAACACCAGAAT---TACCAGAGAACCCATCCATCTCCGTCAATAGCTGA 11648 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 16059 ||||| ||||| || | ||||||||| | | | ||| ||||| | | ||| ||| Sbjct 11647 TTAATCGTTTGCTCTCTTTCATCATTTCC--ACCTCCCATTCCAGCTCCTCTTTGTCTTC 11590 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 16117 |||| ||||||||||||||||| || || || || || ||||| || | || Sbjct 11589 CCACAGCATCAATCTCATCAATAAACACAATACAAGG--AGCTTTCGACTTCGCTTTCTC 11532 Query 16118 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 ||| | ||||| || || || | || || || |||||||| | ||| ||||| | | Sbjct 11531 AAACAAATCCC-TA-ACCCTAGAAGCACCAACTCCAACAAAAAGCTCAACAAACTCAGAA 11474 Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 || | |||| | ||| || || | |||||| |||| |||| || | |||||| Sbjct 11473 GCAGCACATGAAAAGAACGGTACTCCGGCTTCACCAGCAACAGCTCTAGCTAATAGAGTC 11414 Query 16236 TTACCCGTACCTGG 16249 || || |||||||| Sbjct 11413 TTTCCTGTACCTGG 11400 >seq9060 Length=178556 Score = 105 bits (116), Expect = 8e-18 Identities = 197/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| || || | ||| ||||| |||||||| | |||||||| || Sbjct 23188 AAACCCATCCATCTCAGTTAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCCT-- 23131 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | || || |||||||||||||||||||| || || Sbjct 23130 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAATACAATA 23071 Query 16092 CATGGTTGATTTTCGC--GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || |||||| ||| ||||| | ||||| || || || | || ||||| Sbjct 23070 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCCAC 23015 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||| ||||| | | || | ||| | ||| || ||| | ||| Sbjct 23014 ACCAACAAAAAGCTCAACAAACTCCGAAGCCGCACAAGAAAAGAATGGTACACCTGCTTC 22955 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||||||||||| ||||| || Sbjct 22954 TCCAGCCACAGCTCTAGCCAATAGAGTCTTACCTGTACCAGG 22913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620651500034800