Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11467 134 2e-26 seq8589 134 2e-26 seq5306 134 2e-26 seq9133 129 7e-25 seq9060 114 2e-20 seq11595 86.0 7e-12 seq9146 86.0 7e-12 >seq11467 Length=72189 Score = 134 bits (148), Expect = 2e-26 Identities = 256/372 (69%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| | ||| || | ||| | || |||||| | ||| | |||||| || Sbjct 11764 CGATCAAATCTACCAGGTCTAAGCAATGCAGAATCAAGAACATCTGGTCTATTCGTTGCA 11705 Query 9252 GCGATGACAACAATACCTGTTTCATTATCA---AAACCATCCATCTCTGTCAAAAGTTGG 9308 || | |||| || ||| | |||| || || ||||||||||| ||||| || || Sbjct 11704 GCCAACACAATAACACCAGA---ATTACCAGAGAACCCATCCATCTCCGTCAATAGCTGA 11648 Query 9309 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9366 ||||| ||||| || | ||||||||| | | | ||| ||||| | | ||| ||| Sbjct 11647 TTAATCGTTTGCTCTCTTTCATCATTTCC--ACCTCCCATTCCAGCTCCTCTTTGTCTTC 11590 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT--TC 9424 |||| ||||||||||||||||| || |||||||| || ||||| || || || Sbjct 11589 CCACAGCATCAATCTCATCAATAAACACAATACAAGG--AGCTTTCGACTTCGCTTTCTC 11532 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 ||| | ||| | |||||| || || || |||||||| | ||| ||||| | | || Sbjct 11531 AAACAAATCCCTAACCCTAGAAGCACCAACTCCAACAAAAAGCTCAACAAACTCAGAAGC 11472 Query 9485 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 | |||| | ||| || || | |||||| |||| |||| || | |||||||| Sbjct 11471 AGCACATGAAAAGAACGGTACTCCGGCTTCACCAGCAACAGCTCTAGCTAATAGAGTCTT 11412 Query 9545 ACCCGTACCTGG 9556 || |||||||| Sbjct 11411 TCCTGTACCTGG 11400 >seq8589 Length=45551 Score = 134 bits (148), Expect = 2e-26 Identities = 256/372 (69%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| | ||| || | ||| | || |||||| | ||| | |||||| || Sbjct 11764 CGATCAAATCTACCAGGTCTAAGCAATGCAGAATCAAGAACATCTGGTCTATTCGTTGCA 11705 Query 9252 GCGATGACAACAATACCTGTTTCATTATCA---AAACCATCCATCTCTGTCAAAAGTTGG 9308 || | |||| || ||| | |||| || || ||||||||||| ||||| || || Sbjct 11704 GCCAACACAATAACACCAGA---ATTACCAGAGAACCCATCCATCTCCGTCAATAGCTGA 11648 Query 9309 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9366 ||||| ||||| || | ||||||||| | | | ||| ||||| | | ||| ||| Sbjct 11647 TTAATCGTTTGCTCTCTTTCATCATTTCC--ACCTCCCATTCCAGCTCCTCTTTGTCTTC 11590 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT--TC 9424 |||| ||||||||||||||||| || |||||||| || ||||| || || || Sbjct 11589 CCACAGCATCAATCTCATCAATAAACACAATACAAGG--AGCTTTCGACTTCGCTTTCTC 11532 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 ||| | ||| | |||||| || || || |||||||| | ||| ||||| | | || Sbjct 11531 AAACAAATCCCTAACCCTAGAAGCACCAACTCCAACAAAAAGCTCAACAAACTCAGAAGC 11472 Query 9485 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 | |||| | ||| || || | |||||| |||| |||| || | |||||||| Sbjct 11471 AGCACATGAAAAGAACGGTACTCCGGCTTCACCAGCAACAGCTCTAGCTAATAGAGTCTT 11412 Query 9545 ACCCGTACCTGG 9556 || |||||||| Sbjct 11411 TCCTGTACCTGG 11400 >seq5306 Length=3186 Score = 134 bits (148), Expect = 2e-26 Identities = 248/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||||||||||||||| || | || || || | || ||||| | ||||||||| || Sbjct 764 TCAAAACCATCCATCTCAGTTAGGAGCTGATTGAGTGTCTGTTCTCTTTCATCATTACCT 705 Query 9339 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 |||| || | | | |||| | || || |||||||| ||||||| || ||| Sbjct 704 CC---ACCAATTCCGGTTCCTCTTTGCCTACCAACCGCATCAATTTCATCAACAAACACA 648 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || || || ||| | | || |||||||| || ||| || || ||| Sbjct 647 ATGCAAGGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAAGCACCAACA 588 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514 || ||||||||||| ||||| | | | || || | || ||| || ||| || ||| Sbjct 587 CCGACAAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTC 529 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| ||||||||| || | |||||| ||||| ||||| || ||| ||||| | Sbjct 528 ACCAGCAATGGCTTTTGCCAAAAGAGTTTTACCAGTACCAGGAGGACCAATAAGGAGAAC 469 Query 9575 ACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||| ||||||||||| ||| || | |||||||||||| ||| ||||| || || Sbjct 468 ACCTTTCGGAATCTTGGCACCAACAGCAGTGAATCTCTCAGGTTTCTTCAGAAACTCAAC 409 >seq9133 Length=41873 Score = 129 bits (142), Expect = 7e-25 Identities = 222/318 (70%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 9242 ATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAA 9301 ||| ||||| || | |||| || ||| | | | | ||| ||||||||||| ||||| Sbjct 24022 ATTAGTCGCAGCCAACACAATAACACCAGAATTACCAGAAAACCCATCCATCTCAGTCAA 23963 Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGT 9359 ||| || ||||| |||||||| | |||||||| | | | ||| ||||| | | | Sbjct 23962 AAGCTGATTAATCGTTTGTTCTCTCTCATCATTACC--ACCTCCCATTCCAGCTCCTCTT 23905 Query 9360 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGC 9418 ||| | ||||| ||||||||||||||||| || |||||||| || | ||| | || Sbjct 23904 TGCCTCCCCACAGCATCAATCTCATCAATAAACACAATACAAGG-AGCTTTCGACTTCGC 23846 Query 9419 GATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9478 | ||||| | ||| | ||| || || || ||||||||||| | ||| ||||| | Sbjct 23845 CTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACCAACAAAAAGCTCAACAAACTC 23786 Query 9479 TGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538 | || | |||| | ||| || ||| || ||| || |||| |||| || | ||| Sbjct 23785 CGAAGCAGCACATGAAAAGAACGGTACACCAGCTTCGCCAGCAACAGCTCTAGCTAAAAG 23726 Query 9539 AGTCTTACCCGTACCTGG 9556 ||||| || ||||| || Sbjct 23725 CGTCTTCCCTGTACCCGG 23708 >seq9060 Length=178556 Score = 114 bits (126), Expect = 2e-20 Identities = 249/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| | || || | | ||||| |||||| | ||| | |||||| || Sbjct 23277 CGATCAAACCTTCCAGGTCTCAATAGCGCAGAATCAAGAACATCTGGCCTATTCGTAGCT 23218 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| | ||| | | | | ||| ||||||||||| || || | || ||| Sbjct 23217 GCCAATACAATCACACCAGAGTTACCAGAAAACCCATCCATCTCAGTTAACAACTGATTA 23158 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 || |||||||| | |||||||| || | | ||| ||||| | | ||| | || | Sbjct 23157 ATCGTTTGTTCTCTCTCATCATTTCCT--CCTCCCATCCCAGCTCCTCTCTGCCTCCCAA 23100 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC--GGGCGATTTCAAA 9427 | |||||||||||||||||||| |||||||| || |||||| || | ||||| Sbjct 23099 CAGCATCAATCTCATCAATGAATACAATACAAGG--AGCTTTCGCCTTAGCCTTCTCAAA 23042 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 | ||| | ||| || || |||||||||||||| | ||| ||||| | | || | Sbjct 23041 CAAATCCCTAACTCTAGACGCACCCACACCAACAAAAAGCTCAACAAACTCCGAAGCCGC 22982 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 ||| | ||| || ||| | ||| || || | |||| || | ||||||||||| Sbjct 22981 ACAAGAAAAGAATGGTACACCTGCTTCTCCAGCCACAGCTCTAGCCAATAGAGTCTTACC 22922 Query 9548 CGTACCTGG 9556 ||||| || Sbjct 22921 TGTACCAGG 22913 >seq11595 Length=173172 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | || |||||||| || || |||||||| || || ||| Sbjct 64889 CCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTC 64948 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | |||| ||| || ||||||||||||||||| || ||||| || || Sbjct 64949 TTTAGCCAGAAGATAGAGCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 65008 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | || || ||||||| |||| | || | ||| |||| ||||| | Sbjct 65009 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCATCGATCCACGTCATCGCCCACTGA 65065 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTT 117499 || |||||| ||| || || | ||||| Sbjct 65066 GCTTTCTTCGCAACGCAAGGAATAGTTT 65093 >seq9146 Length=70564 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || |||||||||||||| || || ||||||||||| || ||| Sbjct 54258 CCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGGCATGAGACCTCGTTTC 54317 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | || || ||||||||||||||||| || ||||| || || Sbjct 54318 TTTAGCCAGAAGATTGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAA 54377 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | || || || || | |||| | || | ||| |||| ||||||| Sbjct 54378 GCTACGATTCGTTCAGCAAAAGTTTGAGA---TCCATCGATCCAAGTCATCGCCCATTGT 54434 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTT 117499 || |||||| || || || | ||||| Sbjct 54435 GCTTTCTTCGTAACGCAAGGGATAGTTT 54462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589894404686600