Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq8473 129 7e-25 seq10724 125 9e-24 seq8685 86.0 8e-12 >seq8473 Length=72639 Score = 129 bits (142), Expect = 7e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 171903 TATCTTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGT 171962 ||| | || || || || || ||||| || ||||| || || || |||||||| ||| Sbjct 6437 TATGTCCTTGATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTACTCATGCCGTGCTGGT 6378 Query 171963 GCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCT 172022 | || || || |||||||||||| ||| | |||| | || ||||| || || ||| | Sbjct 6377 TCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCTGACCAAAGT 6318 Query 172023 TTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||||||||| ||||||| | ||||| ||||| || |||| |||||||||||| Sbjct 6317 TTCCTTGATGATGAACAAATGGGTGAAGGATATGTTCTCACTTGTGCTGCTTATCCTAC 6259 >seq10724 Length=33194 Score = 125 bits (138), Expect = 9e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 171903 TATCTTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGT 171962 ||| |||| || || || || ||||| || ||||| || || || || ||||| ||| Sbjct 30738 TATGTTCTTGATGCAGCTGAAGAAGCTGGAATTGATTTACCTTACTCATGTCGTGCTGGT 30797 Query 171963 GCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCT 172022 | || || || |||||||||||| ||| | |||| | || ||||| ||||| ||| | Sbjct 30798 TCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCAGACCAAAGT 30857 Query 172023 TTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 || |||||||||||||| || | | |||||| ||||| || |||| ||||||||||| Sbjct 30858 TTTCTTGATGATGATCAGATTGGTGAAGGATTTGTTCTCACTTGTGCAGCTTATCCTAC 30916 >seq8685 Length=252540 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 171897 GATCAGTATCTTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGT 171956 ||||||||| | |||| || || || ||||| || ||||| || ||||| || | Sbjct 168762 GATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTGTAGA 168821 Query 171957 GCCGGTGCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAG 172016 || ||||| ||||| | ||||||||||| ||| ||| || |||||||| || Sbjct 168822 GCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTCGGAT 168881 Query 172017 CAATCTTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTAT 172076 || || |||||||||| ||| | || || | ||| |||| ||||| |||||| Sbjct 168882 GGTTCGTTTCTTGATGATGGTCACTTTGAGAATGGTTATGTTTTGACTTGTGTGGCTTAT 168941 Query 172077 CCTACAAGC-GATTGTGTT 172094 || ||| | ||||||||| Sbjct 168942 CC-ACAGTCTGATTGTGTT 168959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610307415018600