Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq9890 131 2e-25 seq9882 129 7e-25 seq8728 116 4e-21 >seq9890 Length=295843 Score = 131 bits (144), Expect = 2e-25 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||||||| |||| ||||| ||||| |||||||||||||| ||||| || || || Sbjct 44252 CAAAGGTTTGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCGTTCTTAGCTACTTCA 44193 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| || || || ||| | | || ||| || ||| | || Sbjct 44192 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCAG 44135 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || ||| | | || | ||||||||||| || ||||| ||||||||||||| Sbjct 44134 GGAAGCCAGCTCTTCGTATGGCGATGCAGACTAGAGAACAACATATAAGGAGAGACAAAG 44075 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || || |||||||| || ||||| Sbjct 44074 CCACTAGCAACATCTGTACTGCTCA 44050 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| ||||||||| |||||||| |||||||||||||| ||||| || | Sbjct 44753 GAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAAGGTCGT 44694 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| | || | |||| ||| || | || || || || || ||| | || || | Sbjct 44693 CTTGAATCGTTGCTTAATTTCCAGACCATGATTACTGATCTCACTGGACTTCCTATGTCT 44634 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || ||||| || ||||||||| ||||| || || || |||||| Sbjct 44633 AATGCATCGCTTCTAGATGAAGGGACTGCGGCTGCGGAGGCAATG 44589 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| || ||||| || | || || || ||||||||||| ||||||||||| Sbjct 42334 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 42275 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 |||||||| | ||||| || ||||| |||||| | |||||||| Sbjct 42274 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 42226 >seq9882 Length=79551 Score = 129 bits (142), Expect = 7e-25 Identities = 184/258 (71%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 169862 ATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGC 169921 |||||||| | || | |||| |||| ||||| ||||||| | || ||||| || |||| Sbjct 46244 ATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGC 46185 Query 169922 ATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTT 169981 | ||| |||| || || || || |||||| ||| ||||| || | ||| | || || Sbjct 46184 ACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCC 46125 Query 169982 TATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGC 170041 |||| | | ||||| ||| |||| ||||| | | ||||| ||||| ||||| Sbjct 46124 TATTTAGTGTA-TGCATAGTTTTTTTGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 46066 Query 170042 AAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAG 170101 | || || || | ||||| | ||||| |||||| || ||||||||||| | |||| Sbjct 46065 ATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTAG 46006 Query 170102 CAGCACACGGTTACTTTG 170119 | || || ||||| |||| Sbjct 46005 CTGCTCATGGTTATTTTG 45988 >seq8728 Length=275805 Score = 116 bits (128), Expect = 4e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||||||| |||| ||||| ||||| |||||||| ||||| ||||| || || || Sbjct 100801 CAAAGGTTTGGTGTTCCAATGGGTTATGGTGGTCCTCACGCTGCTTTCTTAGCTACTTCA 100742 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| || || || ||| | | || ||| || ||| | | Sbjct 100741 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCTG 100684 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || ||| | | || | ||||||||||| || ||||| ||||| ||||||| Sbjct 100683 GAAAGCCAGCTCTGCGTATGGCTATGCAGACTAGAGAACAACATATAAGGAGGGACAAAG 100624 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || || |||||||| || ||||| Sbjct 100623 CCACTAGCAACATCTGTACTGCTCA 100599 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| ||||||||| |||||||| |||||||||||||| ||||| || | Sbjct 101302 GAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAAGGTCGT 101243 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| | || | |||| ||| || | || || || ||||| || | || || | Sbjct 101242 CTTGAATCGTTGCTTAATTTCCAGACCATGATTACTGATCTTACTGGTCTTCCTATGTCT 101183 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || |||||||| |||| |||| ||||| || || || || ||| Sbjct 101182 AATGCATCTCTTCTAGACGAAGGTACTGCGGCTGCGGAGGCTATG 101138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579127981525600