Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq9890 116 4e-21 seq9882 114 2e-20 seq8728 102 1e-16 >seq9890 Length=295843 Score = 116 bits (128), Expect = 4e-21 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || || |||||||||||||| ||||| || || || Sbjct 44252 CAAAGGTTTGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCGTTCTTAGCTACTTCA 44193 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| || || || ||| | | || ||| || ||| || Sbjct 44192 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCAG 44135 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || ||| | | || | ||||||||||| || ||||| || |||||||||| Sbjct 44134 GGAAGCCAGCTCTTCGTATGGCGATGCAGACTAGAGAACAACATATAAGGAGAGACAAAG 44075 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 44074 CCACTAGCAACATCTGTACTGCTCAAG 44048 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 |||||||| ||||||||| |||||||| |||||||||||||| ||||| || | Sbjct 44753 GAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAAGGTCGT 44694 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| | || | |||| ||| || | || || || ||||| ||||| || || | Sbjct 44693 CTTGAATCGTTGCTTAATTTCCAGACCATGATTACTGATCTCACTGGACTTCCTATGTCT 44634 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || ||||| || ||||||||| ||||| || || || |||||| Sbjct 44633 AATGCATCGCTTCTAGATGAAGGGACTGCGGCTGCGGAGGCAATG 44589 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 42334 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 42275 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 |||||||| | ||||| |||||||| |||||| | |||||||| Sbjct 42274 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 42226 >seq9882 Length=79551 Score = 114 bits (126), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 172280 ATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGC 172339 |||||||| | || | |||| |||| |||| ||||||| | || ||||| || |||| Sbjct 46244 ATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGC 46185 Query 172340 ATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTT 172399 | ||| |||| || || || || |||||| ||| ||||| || | || | || || Sbjct 46184 ACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCC 46125 Query 172400 TATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAG 172459 |||| | | |||| ||| ||| || || ||| | | ||||| || || || ||| Sbjct 46124 TATTTAGTGTA-TGCATAGTTTTTTTGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 46066 Query 172460 CAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAG 172519 ||||| || | || |||| ||||| |||||| || ||||||||||| | |||| Sbjct 46065 ATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTAG 46006 Query 172520 CAGCACACGGTTACTTTG 172537 | || || ||||| |||| Sbjct 46005 CTGCTCATGGTTATTTTG 45988 >seq8728 Length=275805 Score = 102 bits (112), Expect = 1e-16 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || || |||||||| ||||| ||||| || || || Sbjct 100801 CAAAGGTTTGGTGTTCCAATGGGTTATGGTGGTCCTCACGCTGCTTTCTTAGCTACTTCA 100742 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| || || || ||| | | || ||| || ||| | Sbjct 100741 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCTG 100684 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || ||| | | || | ||||||||||| || ||||| || || ||||||| Sbjct 100683 GAAAGCCAGCTCTGCGTATGGCTATGCAGACTAGAGAACAACATATAAGGAGGGACAAAG 100624 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 100623 CCACTAGCAACATCTGTACTGCTCAAG 100597 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 98856 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 98797 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCAT 159799 |||||||| | ||||| |||||||| |||||| | |||||| Sbjct 98796 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCAT 98750 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 |||||||| ||||||||| |||||||| |||||||||||||| ||||| || | Sbjct 101302 GAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATCTCTCAAGGTCGT 101243 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| | || | |||| ||| || | || || || || || || || || || | Sbjct 101242 CTTGAATCGTTGCTTAATTTCCAGACCATGATTACTGATCTTACTGGTCTTCCTATGTCT 101183 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || |||||||| |||| |||| ||||| || || || || ||| Sbjct 101182 AATGCATCTCTTCTAGACGAAGGTACTGCGGCTGCGGAGGCTATG 101138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587965087252400