Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq9882 131 2e-25 seq10724 86.0 7e-12 >seq9882 Length=79551 Score = 131 bits (144), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 162867 TGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926 ||||| |||| || ||| |||| ||||| || ||||||||| |||| || || || || Sbjct 46222 TGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGCACAACTTTCTTATACACCCATT 46163 Query 162927 CCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTC 162986 |||||||| ||||| || ||||| ||| | || || || || |||| | |||| ||| Sbjct 46162 TCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCCTATTTAGTGTA-TGCATAGTTT 46104 Query 162987 TTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTA 163046 ||| || || ||| | || | || || || |||| ||| || || | ||||| Sbjct 46103 TTTTGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTA 46044 Query 163047 CAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTT 163100 || |||||||||||| || | ||||||||| | || || || |||||||| || Sbjct 46043 CATATTCGGTCAAGAAAAATAAACATACAACTTTGTAGCTGCTCATGGTTATTT 45990 >seq10724 Length=33194 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 102087 TTGATTTACCTTCTTCGTGTAAAGCAGGAGCTTGTTCAGCGTGCGCTGGCAAACTCGTCT 102146 |||||||||||| || ||| || || |||| ||| || ||||| ||| | || | Sbjct 30769 TTGATTTACCTTACTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGT 30828 Query 102147 CTGGCACCGTAGATAATGAAGAGCAATCTTTCCTCGATGATGATCAACTTGAAGACGGGT 102206 |||| | || ||| | ||| ||| ||| || ||||||||||| ||| || || | Sbjct 30829 CTGGTTCTGTTGATCAATCAGACCAAAGTTTTCTTGATGATGATCAGATTGGTGAAGGAT 30888 Query 102207 GGGTTCTCACTTGTGTGGCATATCCTACTAGCGACTGCGTAATTTTAACTGAACAAGAAG 102266 ||||||||||||| || ||||||||| || || ||| |||| | ||||||| Sbjct 30889 TTGTTCTCACTTGTGCAGCTTATCCTACTTCTGATGTTGTTATTAAAACTCACCAAGAAG 30948 Query 102267 AAAATCT 102273 | |||| Sbjct 30949 ATGATCT 30955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557502348793000