Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq9882 129 7e-25 >seq9882 Length=79551 Score = 129 bits (142), Expect = 7e-25 Identities = 174/241 (72%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 182269 GAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGC 182328 |||||| || | |||| || |||| | || ||||| |||||||||||| ||||||| | Sbjct 46229 GAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGCACAACTTTCTTATAC 46170 Query 182329 ATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGC 182388 | || || |||||||| |||||||| ||||||||| | || || || ||||||| |||| Sbjct 46169 ACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCCTATTTAGTG-TATGC 46111 Query 182389 ACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACT 182448 | ||| ||| || || ||| | || | || || || || | || || || Sbjct 46110 ATAGTTTTTTTGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 46051 Query 182449 ATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACT 182508 | ||||||| |||||||||||| || | || || ||| | || || || ||||| || | Sbjct 46050 AAGGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTAGCTGCTCATGGTTATT 45991 Query 182509 T 182509 | Sbjct 45990 T 45990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611606424767000