Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9146 165 9e-36 seq8766 141 1e-28 seq11555 131 2e-25 seq11110 131 2e-25 seq10889 86.0 7e-12 >seq9146 Length=70564 Score = 165 bits (182), Expect = 9e-36 Identities = 576/887 (65%), Gaps = 19/887 (2%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||| || || |||| | |||||| || || |||||||| || | || ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||| |||||| | ||| || | || | | |||| | | Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAGCGAAACCAT 54064 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||||||||| ||||| | |||||| |||| | |||| |||||||| | || Sbjct 54065 TAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACCAA 54124 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || || || | ||| ||| ||| || | || || || | | || Sbjct 54125 CGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACGAT 54184 Query 18909 AGATACAACTCTATCTTCATTAGGAG--GGTATAGA-AGATGTTTAAACATCAAACATGC 18965 || || | ||||| || | | | | | ||| | || | | | || || Sbjct 54185 TGACTTCACGCGCTCTTCCGTAAGCTTCGTTCTCAACAGA-GAGTAGAGA--AGGCAAGC 54241 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 |||||||| |||| || ||||||| | || | |||||| || || ||||||||||| Sbjct 54242 GAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAACCAGG 54301 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATAC 19084 ||| || |||| ||| |||| |||||| || ||| |||| | | || || ||||| |||| Sbjct 54302 CATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAGATAC 54360 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT---AGCATCATTATTATGAA 19141 |||| || || ||||| || | || ||| || || | || ||| || | Sbjct 54361 CTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAG-ATC-----CATCGA 54414 Query 19142 TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAA 19201 |||| ||| ||||| | || ||||| | || || || || || || || | || Sbjct 54415 TCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAA 54474 Query 19202 ATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 | |||| | ||| | ||||||| | ||||| ||| | | | ||| ||||| | Sbjct 54475 AGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCT 54534 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | ||||||||||| || || || || ||||||||||||||| | || || | | | Sbjct 54535 CAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTT 54594 Query 19322 GTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 | || || ||| |||| | | ||| || ||| |||||||| || || Sbjct 54595 GAACATC-TGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCG 54653 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 ||||| || | || ||||| || || || |||| | | ||| | | ||||||| Sbjct 54654 AAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCA 54713 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 || | |||| |||||||||||| | ||||| || || || || ||||| || Sbjct 54714 CGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTG 54773 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 ||||| | ||| || | |||| || || ||||| ||| ||||| Sbjct 54774 TACATCTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq8766 Length=69736 Score = 141 bits (156), Expect = 1e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||||| ||||||| || | || | |||||||||||||||||| Sbjct 54243 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGGACAATACCA 54302 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||||||| | |||| |||||| || |||| Sbjct 54303 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCTCGAATATTATGAACTGAA 54362 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 54363 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACATTCCTTAAGTGTTTCATAAATG 54422 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 || || || ||||||||| |||| | ||||| ||||| Sbjct 54423 CCCTCAATGCTATCATCTTTCATGCAGATCAGAAAGCAACT 54463 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | ||| || | || |||||||||||| | |||||| ||| || | ||| | Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| || |||| |||||||| | ||| || ||||| | || || | ||| | Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||||||||||||||||| | | | ||||||||||| |||||| |||| | Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAACTGTCCCTTGGATTTTCAAAAGGTATGATCTTTCAA 54753 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||| |||||| | | ||| ||| || |||| |||||| Sbjct 54754 GAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAATT 54803 >seq11555 Length=225698 Score = 131 bits (144), Expect = 2e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| ||||| || | || |||| ||||||| | |||||| ||| || | || | | Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || |||| || ||||||| ||||| | ||| ||||| | ||| || | ||||||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | ||||||||||||||||| |||| | | ||| || || |||||| |||| | | Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 |||||||||||||| || | ||| ||| || ||||| Sbjct 13782 GTTTTAAAACCAAAGTAATCATATTCAAAATCACGATCAT 13821 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||| | |||||| ||||| || | | |||||| |||||||| Sbjct 13273 ACCTCCTTGGTCAACATAACGAACAGTATCATTATATACACGCAGCATTGGAACAATACC 13332 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| ||||| || || ||| ||||||||| || | ||| || | ||| Sbjct 13333 ATTAGATGATCCATTTGTGCCACGAATGTAACTTCCAGCTGCACGTATGTTGTGTACTGA 13392 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || ||| ||||| || || | | ||||| ||||| ||| | |||||||| || Sbjct 13393 AACACCAATACCTCCAGCTGATCTGCTTATTACTGCACAATCTTTTAATGTATCATATAT 13452 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || || |||||||| ||||| || ||||| |||||| Sbjct 13453 ACCCTCGATGCTATCATCCTTCATACATAGCAGAAAGCAACTA 13495 >seq11110 Length=291012 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||||| ||||||| || | || | |||||||| ||||||||| Sbjct 226147 CCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACCA 226206 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||||||| || | |||||| || ||| Sbjct 226207 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGAA 226266 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || ||| ||| | ||||||| ||| || ||||| ||||| Sbjct 226267 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAATG 226326 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || || ||||||||| |||| | ||||||||| ||| Sbjct 226327 CCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | ||||| | || |||||||||||| | |||||| ||| || | ||| | Sbjct 226477 AGTTCCAGCGTTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 226536 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 ||| |||| || |||| || ||||| | ||| || || || | || || | ||| | Sbjct 226537 ATAAGTTTTGATTGCAGATTCAATATCATCCTTG-TGAATGCCAACAGCAACCCTCATAA 226595 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||| |||||||||| | | | | |||||| || ||||| | || | Sbjct 226596 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGAGTTTCAAGAGGTATGACCTCTCAA 226655 Query 48778 ATGTTTTAAAACCAAA 48793 |||||||| ||||| Sbjct 226656 GAGTTTTAAATCCAAA 226671 >seq10889 Length=437650 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| ||||| |||||||| ||| | ||| ||||| ||||||||| Sbjct 285000 CAAGCAAAGTCACAATGGAGTCCTTCGTCTCTCGATATAAGTTCGTTAGAGAATGTTAAA 285059 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||| || ||||| || || | |||||| || Sbjct 285060 CCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGAT 285094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562026486192600